Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1869278..1869423 | Replicon | chromosome |
| Accession | NZ_CP081891 | ||
| Organism | Klebsiella pneumoniae strain CT-04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1869314..1869416 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1869278..1869423 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZ663_RS09030 (KZ663_09000) | 1864408..1866468 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| KZ663_RS09035 (KZ663_09005) | 1866472..1867131 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KZ663_RS09040 (KZ663_09010) | 1867210..1867440 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KZ663_RS09045 (KZ663_09015) | 1867553..1867927 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KZ663_RS09050 (KZ663_09020) | 1867931..1868800 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| KZ663_RS09055 (KZ663_09025) | 1868817..1869155 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1869278..1869423 | - | 146 | - | - | Antitoxin |
| - | 1869314..1869416 | + | 103 | - | - | Toxin |
| KZ663_RS09060 (KZ663_09030) | 1869791..1869934 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KZ663_RS09065 (KZ663_09035) | 1870039..1871007 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| KZ663_RS09070 (KZ663_09040) | 1871164..1871817 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| KZ663_RS09075 (KZ663_09045) | 1871814..1872005 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KZ663_RS09080 (KZ663_09050) | 1872103..1872342 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KZ663_RS09085 (KZ663_09055) | 1872458..1873891 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213680 NZ_CP081891:1869314-1869416 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT213680 NZ_CP081891:c1869423-1869278 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
