Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1860906..1861051 | Replicon | chromosome |
| Accession | NZ_CP081889 | ||
| Organism | Klebsiella pneumoniae strain IA-044 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1860942..1861044 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1860906..1861051 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZ664_RS09015 (KZ664_09015) | 1856036..1858096 | + | 2061 | WP_019705169.1 | oligopeptidase B | - |
| KZ664_RS09020 (KZ664_09020) | 1858100..1858759 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KZ664_RS09025 (KZ664_09025) | 1858838..1859068 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KZ664_RS09030 (KZ664_09030) | 1859181..1859555 | + | 375 | WP_014343244.1 | CopC domain-containing protein YobA | - |
| KZ664_RS09035 (KZ664_09035) | 1859559..1860428 | + | 870 | WP_014343243.1 | copper homeostasis membrane protein CopD | - |
| KZ664_RS09040 (KZ664_09040) | 1860445..1860783 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1860906..1861051 | - | 146 | - | - | Antitoxin |
| - | 1860942..1861044 | + | 103 | - | - | Toxin |
| KZ664_RS09045 (KZ664_09045) | 1861419..1861562 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KZ664_RS09050 (KZ664_09050) | 1861667..1862635 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KZ664_RS09055 (KZ664_09055) | 1862792..1863445 | + | 654 | WP_014343242.1 | protein-serine/threonine phosphatase | - |
| KZ664_RS09060 (KZ664_09060) | 1863442..1863633 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KZ664_RS09065 (KZ664_09065) | 1863731..1863970 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KZ664_RS09070 (KZ664_09070) | 1864086..1865519 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213643 NZ_CP081889:1860942-1861044 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT213643 NZ_CP081889:c1861051-1860906 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
