Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2754593..2754864 | Replicon | chromosome |
| Accession | NZ_CP081881 | ||
| Organism | Escherichia coli strain WW2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2754631..2754733 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2754593..2754864 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5O11_RS13110 | 2751750..2753189 | + | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K5O11_RS13115 | 2753307..2753543 | + | 237 | WP_001295499.1 | YebV family protein | - |
| K5O11_RS13120 | 2753648..2753839 | + | 192 | WP_001296140.1 | YebW family protein | - |
| K5O11_RS13125 | 2753840..2754496 | - | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| - | 2754593..2754864 | + | 272 | - | - | Antitoxin |
| - | 2754631..2754733 | - | 103 | - | - | Toxin |
| K5O11_RS13130 | 2754892..2755233 | - | 342 | WP_000976484.1 | YebY family protein | - |
| K5O11_RS13135 | 2755246..2756118 | - | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| K5O11_RS13140 | 2756122..2756496 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| K5O11_RS13145 | 2756635..2756865 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K5O11_RS13150 | 2756967..2757623 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K5O11_RS13155 | 2757647..2758309 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213612 NZ_CP081881:c2754733-2754631 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT213612 NZ_CP081881:2754593-2754864 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
