Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1930302..1930449 | Replicon | chromosome |
| Accession | NZ_CP081827 | ||
| Organism | Klebsiella quasipneumoniae strain AR8538 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1930343..1930445 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1930302..1930449 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5P22_RS09290 | 1925437..1927497 | + | 2061 | WP_048297811.1 | oligopeptidase B | - |
| K5P22_RS09295 | 1927501..1928160 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| K5P22_RS09300 | 1928239..1928469 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K5P22_RS09305 | 1928582..1928956 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| K5P22_RS09310 | 1928960..1929829 | + | 870 | WP_177335450.1 | copper homeostasis membrane protein CopD | - |
| K5P22_RS09315 | 1929846..1930184 | + | 339 | WP_072413393.1 | YebY family protein | - |
| - | 1930302..1930449 | - | 148 | - | - | Antitoxin |
| - | 1930343..1930445 | + | 103 | - | - | Toxin |
| K5P22_RS09320 | 1930824..1930967 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| K5P22_RS09325 | 1931068..1932036 | - | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| K5P22_RS09330 | 1932193..1932846 | + | 654 | WP_023290232.1 | protein-serine/threonine phosphatase | - |
| K5P22_RS09335 | 1932843..1933034 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K5P22_RS09340 | 1933132..1933371 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K5P22_RS09345 | 1933487..1934917 | - | 1431 | WP_087824136.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213523 NZ_CP081827:1930343-1930445 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT213523 NZ_CP081827:c1930449-1930302 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
