Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4346719..4346864 | Replicon | chromosome |
| Accession | NZ_CP081816 | ||
| Organism | Klebsiella pneumoniae strain AR8416 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4346755..4346857 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4346719..4346864 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5O16_RS21905 | 4341849..4343909 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K5O16_RS21910 | 4343913..4344572 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K5O16_RS21915 | 4344651..4344881 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K5O16_RS21920 | 4344994..4345368 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K5O16_RS21925 | 4345372..4346241 | + | 870 | WP_159195797.1 | copper homeostasis membrane protein CopD | - |
| K5O16_RS21930 | 4346258..4346596 | + | 339 | WP_167803391.1 | YebY family protein | - |
| - | 4346719..4346864 | - | 146 | - | - | Antitoxin |
| - | 4346755..4346857 | + | 103 | - | - | Toxin |
| K5O16_RS21935 | 4347232..4347375 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K5O16_RS21940 | 4347480..4348448 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K5O16_RS21945 | 4348605..4349258 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K5O16_RS21950 | 4349255..4349446 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K5O16_RS21955 | 4349544..4349783 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K5O16_RS21960 | 4349899..4351332 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213480 NZ_CP081816:4346755-4346857 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT213480 NZ_CP081816:c4346864-4346719 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
