Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 912461..913115 Replicon chromosome
Accession NZ_CP081767
Organism Escherichia coli strain 0H18

Toxin (Protein)


Gene name cptA Uniprot ID S1PAM6
Locus tag J6O59_RS04520 Protein ID WP_000244781.1
Coordinates 912708..913115 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID S1PPB1
Locus tag J6O59_RS04515 Protein ID WP_000354046.1
Coordinates 912461..912727 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J6O59_RS04490 (907626) 907626..908368 + 743 Protein_882 SDR family oxidoreductase -
J6O59_RS04495 (908430) 908430..909863 - 1434 WP_001389468.1 6-phospho-beta-glucosidase BglA -
J6O59_RS04500 (909908) 909908..910219 + 312 WP_001182957.1 N(4)-acetylcytidine aminohydrolase -
J6O59_RS04505 (910383) 910383..911042 + 660 WP_000250274.1 hemolysin III family protein -
J6O59_RS04510 (911238) 911238..912218 - 981 WP_000886082.1 tRNA-modifying protein YgfZ -
J6O59_RS04515 (912461) 912461..912727 + 267 WP_000354046.1 FAD assembly factor SdhE Antitoxin
J6O59_RS04520 (912708) 912708..913115 + 408 WP_000244781.1 protein YgfX Toxin
J6O59_RS04525 (913155) 913155..913676 - 522 WP_001055868.1 flavodoxin FldB -
J6O59_RS04530 (913788) 913788..914684 + 897 WP_000806638.1 site-specific tyrosine recombinase XerD -
J6O59_RS04535 (914709) 914709..915419 + 711 WP_000715213.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
J6O59_RS04540 (915425) 915425..917158 + 1734 WP_000813200.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16061.99 Da        Isoelectric Point: 11.5202

>T213334 WP_000244781.1 NZ_CP081767:912708-913115 [Escherichia coli]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVKAPWMIKSGMMLRLRSDSGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

>T213334 NZ_CP107548:c2745078-2744782 [Pusillimonas sp. M17]
ATGTTCACAGTCAAGCAAACGCCGGAGTTCGAGCGATGGATTGGCGGCCTGAAGGATGGCATGGCTCGAATTCGCCTGGC
AAAGCGCTTGGATAAGGTTCAGCGCGGCAACCTGGGTGATGTGGCGCCGATAGGCGAGGGCGTCAGCGAAATGCGTGAAC
ACTTTGGTCCTGGCTGGCGAATGTATTACGTCCAGCGGGGCGATGTGTTGATTGTCATGCTGGGCGGCGGCGACAAGTCC
ACACAGAATGCCGATATCAAGCAGGCCATCGCGCTGGCGAAGACACTGCAGGAGTAA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10547.12 Da        Isoelectric Point: 5.1599

>AT213334 WP_000354046.1 NZ_CP081767:912461-912727 [Escherichia coli]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp

>AT213334 NZ_CP107548:c2744776-2744471 [Pusillimonas sp. M17]
ATGACCAAGACAAGCAAGATTTCCGAGCTGCCGGAGTTCGACATGGCCGAAGTCCTCAAGACGGATGAGGACATTGCCAA
CTATCTGACGGTGGTTCTGGAAGAAAACGATCCCGCCGAGCTTTCCCATGCGCTGGGTGTCATTGCCCGCGCGCGTGGTA
TGACGGAAGTCGCGCGAGCCAGCGGTCTGACACGTGAGGCGCTCTATAAGGCATTGCGCCCTGGATCGCACCCGCGCTTC
GATACCATTGCCCGTGTATGCGCCGCGCTGGGTGTGCAACTGACTGCCCGGCCTGCGCATTCATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1PAM6

Antitoxin

Source ID Structure
PDB 6B58
PDB 1X6I
PDB 1X6J
PDB 6C12
AlphaFold DB A0A7U9QD57

References