Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2162952..2163223 | Replicon | chromosome |
| Accession | NZ_CP081719 | ||
| Organism | Escherichia coli strain CX05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2163082..2163185 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2162952..2163223 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6O38_RS10515 | 2159507..2160169 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J6O38_RS10520 | 2160193..2160849 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J6O38_RS10525 | 2160951..2161181 | - | 231 | WP_088765774.1 | DNA polymerase III subunit theta | - |
| J6O38_RS10530 | 2161320..2161694 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| J6O38_RS10535 | 2161698..2162570 | + | 873 | WP_088765773.1 | copper homeostasis membrane protein CopD | - |
| J6O38_RS10540 | 2162583..2162924 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2162952..2163223 | - | 272 | - | - | Antitoxin |
| - | 2163082..2163185 | + | 104 | - | - | Toxin |
| J6O38_RS10545 | 2163320..2163976 | + | 657 | WP_032281033.1 | protein-serine/threonine phosphatase | - |
| J6O38_RS10550 | 2163977..2164168 | - | 192 | WP_001296140.1 | YebW family protein | - |
| J6O38_RS10555 | 2164273..2164509 | - | 237 | WP_088765772.1 | YebV family protein | - |
| J6O38_RS10560 | 2164627..2166066 | - | 1440 | WP_088765914.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T213215 NZ_CP081719:2163082-2163185 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT213215 NZ_CP081719:c2163223-2162952 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
