Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1046104..1046337 | Replicon | chromosome |
| Accession | NC_007606 | ||
| Organism | Shigella dysenteriae Sd197 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1046104..1046207 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1046104..1046337 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SDY_RS05520 | 1041281..1042795 | + | 1515 | WP_001187828.1 | arabinose ABC transporter ATP-binding protein AraG | - |
| SDY_RS05525 | 1042810..1043796 | + | 987 | WP_000100195.1 | arabinose ABC transporter permease AraH | - |
| SDY_RS05530 | 1043963..1044208 | + | 246 | Protein_1062 | trehalose-phosphatase | - |
| SDY_RS05540 | 1044340..1045496 | + | 1157 | WP_171554039.1 | IS3 family transposase | - |
| SDY_RS05545 | 1045542..1045982 | + | 441 | Protein_1064 | tyrosine-type recombinase/integrase | - |
| - | 1046104..1046207 | - | 104 | - | - | Toxin |
| - | 1046104..1046337 | + | 234 | - | - | Antitoxin |
| SDY_RS05550 | 1046365..1046706 | - | 342 | WP_000976472.1 | YebY family protein | - |
| SDY_RS05555 | 1046719..1047592 | - | 874 | Protein_1066 | copper homeostasis membrane protein CopD | - |
| SDY_RS05560 | 1047596..1047970 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| SDY_RS05565 | 1048109..1048339 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| SDY_RS05570 | 1048441..1049097 | + | 657 | WP_000896381.1 | carbon-nitrogen hydrolase family protein | - |
| SDY_RS05575 | 1049121..1049783 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T21319 NC_007606:c1046207-1046104 [Shigella dysenteriae Sd197]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT21319 NC_007606:1046104-1046337 [Shigella dysenteriae Sd197]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
