Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) yeeUV (cbtA-cbeA)/CbtA-CbeA
Location 768959..769746 Replicon chromosome
Accession NZ_CP081713
Organism Escherichia coli strain CX04

Toxin (Protein)


Gene name yeeV Uniprot ID A0A6L5EGB6
Locus tag J6O07_RS03805 Protein ID WP_032669201.1
Coordinates 769369..769746 (+) Length 126 a.a.

Antitoxin (Protein)


Gene name yeeU Uniprot ID A0A6L5EE19
Locus tag J6O07_RS03800 Protein ID WP_023567998.1
Coordinates 768959..769318 (+) Length 120 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J6O07_RS03755 (764220) 764220..764933 + 714 WP_032669194.1 WYL domain-containing protein -
J6O07_RS03760 (764930) 764930..765565 + 636 WP_020837117.1 hypothetical protein -
J6O07_RS03765 (765604) 765604..766059 + 456 WP_000754598.1 hypothetical protein -
J6O07_RS03770 (766056) 766056..766505 + 450 WP_032669197.1 IrmA family protein -
J6O07_RS03775 (766577) 766577..766808 + 232 Protein_742 DUF905 domain-containing protein -
J6O07_RS03780 (766907) 766907..767728 + 822 WP_032669198.1 DUF932 domain-containing protein -
J6O07_RS03785 (767759) 767759..768202 + 444 WP_032669199.1 antirestriction protein -
J6O07_RS03790 (768214) 768214..768693 + 480 WP_032669200.1 DNA repair protein RadC -
J6O07_RS03795 (768714) 768714..768935 + 222 WP_023567997.1 DUF987 domain-containing protein -
J6O07_RS03800 (768959) 768959..769318 + 360 WP_023567998.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin
J6O07_RS03805 (769369) 769369..769746 + 378 WP_032669201.1 TA system toxin CbtA family protein Toxin
J6O07_RS03810 (769743) 769743..770234 + 492 WP_032672023.1 DUF5983 family protein -
J6O07_RS03815 (770264) 770264..770467 + 204 WP_032669203.1 DUF957 domain-containing protein -
J6O07_RS03820 (770531) 770531..771379 + 849 WP_032669204.1 DUF4942 domain-containing protein -
J6O07_RS03830 (771682) 771682..772188 + 507 WP_000228937.1 G/U mismatch-specific DNA glycosylase -
J6O07_RS03835 (772267) 772267..774108 - 1842 WP_000437371.1 RNA polymerase sigma factor RpoD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-112)

Antitoxin

Antitoxin CbeA

(15-114)


Sequences

Toxin        


Download         Length: 126 a.a.        Molecular weight: 14157.93 Da        Isoelectric Point: 6.2236

>T213178 WP_032669201.1 NZ_CP081713:769369-769746 [Escherichia coli]
MQTQPLSSTQEATPRPSPVEIWQRLLSHLLDRHYGLTLNDTPFGNDGVIQEHIDAGISLCDAVNFIVEKYDLVRTDRRGF
NAETQSPLLSSIDILRARKATGLMTRNDYRTVTDITTGKYREVQP

Download         Length: 378 bp

>T213178 NZ_CP107481:c6004-5690 [Klebsiella pneumoniae]
ATGCCACAGGTAACGATTTCCGCGCTGGCACAGCGCGATTTACAACGCCTTCAGGACTTTCTCAAAACCAAAAATCGGCT
GGCAGCCAGAAAAGGAGGTGAGGTGATCGTCCGGGCTATCCAGCAACTGAAAACATTGCCAGACATTGGCCGCCCGGTGC
CGTTTCTGCCGCTGGAATATAAGGAACTGGTGATCGGGTTTGGCGACAGTGGCTATGTGATGCTCTACCGCCACGACCGG
GAAATGGACCAGATTGTGATCGTCACCGTCAGGCATCAGAAAGAATCCGGGTATCCGGGGGCAGACAGCCTCTAA

Antitoxin


Download         Length: 120 a.a.        Molecular weight: 13192.04 Da        Isoelectric Point: 6.3122

>AT213178 WP_023567998.1 NZ_CP081713:768959-769318 [Escherichia coli]
MSNEIPTVNHDITEPWWGLKRSITPCFGARLVQAGNRLHYLADRANITGQFSDADLRYLDQAFPLLLKQLELMLTSGELN
PCHQHCVTLYAKGLTCEADSLGSHGYVYLAIYPTPAATA

Download         Length: 360 bp

>AT213178 NZ_CP107481:c6270-5992 [Klebsiella pneumoniae]
ATGTCATCAGCAACATCCATCAGGCTCGATGAAGAACTTAAGGACCGGCTGAAAACGCTGGCCGATGACCGGCACCGCTC
AGCGCACGCGCTAATGCTGGAGGCAATCACCGAATACATCGACCGGGAAGAGAAGCGCAGCCAGTACCTGCGGGACGGAC
AGGCCGCATGGCAGCACTATCAGGAAACGGGTCTGCACCTTACTGCGGAAGAAGCGGAAGCCTGGATAAGTACCTGGGGA
ACTGAGAACGAGCAGGATGCTCCGCCATGCCACAGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A6L5EGB6

Antitoxin

Source ID Structure
AlphaFold DB A0A6L5EE19

References