Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/upstrm_HI1419-dnstrm_HI1420 |
| Location | 6137153..6137749 | Replicon | chromosome |
| Accession | NZ_CP081490 | ||
| Organism | Pseudomonas protegens strain PS1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | K5F93_RS27840 | Protein ID | WP_221809720.1 |
| Coordinates | 6137153..6137455 (+) | Length | 101 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | K5F93_RS27845 | Protein ID | WP_016968235.1 |
| Coordinates | 6137459..6137749 (+) | Length | 97 a.a. |
Genomic Context
Location: 6133849..6135063 (1215 bp)
Type: Others
Protein ID: WP_221809718.1
Type: Others
Protein ID: WP_221809718.1
Location: 6135157..6136254 (1098 bp)
Type: Others
Protein ID: WP_102862980.1
Type: Others
Protein ID: WP_102862980.1
Location: 6136251..6136979 (729 bp)
Type: Others
Protein ID: WP_221809719.1
Type: Others
Protein ID: WP_221809719.1
Location: 6137153..6137455 (303 bp)
Type: Toxin
Protein ID: WP_221809720.1
Type: Toxin
Protein ID: WP_221809720.1
Location: 6137459..6137749 (291 bp)
Type: Antitoxin
Protein ID: WP_016968235.1
Type: Antitoxin
Protein ID: WP_016968235.1
Location: 6137849..6138247 (399 bp)
Type: Others
Protein ID: WP_221809721.1
Type: Others
Protein ID: WP_221809721.1
Location: 6138312..6138791 (480 bp)
Type: Others
Protein ID: WP_221812432.1
Type: Others
Protein ID: WP_221812432.1
Location: 6138903..6139400 (498 bp)
Type: Others
Protein ID: WP_260627539.1
Type: Others
Protein ID: WP_260627539.1
Location: 6139489..6141621 (2133 bp)
Type: Others
Protein ID: WP_221809722.1
Type: Others
Protein ID: WP_221809722.1
Location: 6132404..6133747 (1344 bp)
Type: Others
Protein ID: WP_260627538.1
Type: Others
Protein ID: WP_260627538.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5F93_RS27820 (K5F93_27820) | 6132404..6133747 | - | 1344 | WP_260627538.1 | precorrin-3B synthase | - |
| K5F93_RS27825 (K5F93_27825) | 6133849..6135063 | + | 1215 | WP_221809718.1 | precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE | - |
| K5F93_RS27830 (K5F93_27830) | 6135157..6136254 | + | 1098 | WP_102862980.1 | cobalt-precorrin-5B (C(1))-methyltransferase | - |
| K5F93_RS27835 (K5F93_27835) | 6136251..6136979 | + | 729 | WP_221809719.1 | cobalt-precorrin-6A reductase | - |
| K5F93_RS27840 (K5F93_27840) | 6137153..6137455 | + | 303 | WP_221809720.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| K5F93_RS27845 (K5F93_27845) | 6137459..6137749 | + | 291 | WP_016968235.1 | putative addiction module antidote protein | Antitoxin |
| K5F93_RS27850 (K5F93_27850) | 6137849..6138247 | + | 399 | WP_221809721.1 | DUF2946 domain-containing protein | - |
| K5F93_RS27855 (K5F93_27855) | 6138312..6138791 | + | 480 | WP_221812432.1 | copper chaperone PCu(A)C | - |
| K5F93_RS27865 (K5F93_27865) | 6138903..6139400 | + | 498 | WP_260627539.1 | DUF2946 domain-containing protein | - |
| K5F93_RS27870 (K5F93_27870) | 6139489..6141621 | + | 2133 | WP_221809722.1 | TonB-dependent copper receptor | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11663.42 Da Isoelectric Point: 10.4917
>T212932 WP_221809720.1 NZ_CP081490:6137153-6137455 [Pseudomonas protegens]
MYVFEQTLEFSRWLLHLKDPQGKTRVLARIRAAQLGRFGDCEPVGEGVYEMRIHRGPGYRVYFSRRNTVIYLLLIGGDKG
TQRRDIQRARQLAHDLKSEG
MYVFEQTLEFSRWLLHLKDPQGKTRVLARIRAAQLGRFGDCEPVGEGVYEMRIHRGPGYRVYFSRRNTVIYLLLIGGDKG
TQRRDIQRARQLAHDLKSEG
Download Length: 303 bp
>T212932 NZ_CP107408:326972-327340 [Klebsiella pneumoniae]
ATGACGCTGCAGATTATCTCAGCGGAAGAGATAATACAGTTTCACGACAGGCTGCTCCGCGTCACGCCTGGCGTTGCCGG
TATGCCCGATCCAGGGCGTGCCGAAGCGATAATGTATAGGGTGCTAAACAAAATTGAATATGAAGGTGTGACAGACGTGT
GGCGACTCGCTGCGATGCATCTGCTGGCGATTTCTCGCGGTCATATATTTAATGATGGTAATAAGCGTACGGCACTGTTT
ATCACTCTGCTTTTTTTAAAGCGAAATGGAATTATATTGCCGGCGAATCCAGACTTCGTCGGCATGACCGTCGAGGCGGC
AGCAGGGCAACTTACCCTGGAACAGATTGTCGCGCGCTTGCGCGGATGA
ATGACGCTGCAGATTATCTCAGCGGAAGAGATAATACAGTTTCACGACAGGCTGCTCCGCGTCACGCCTGGCGTTGCCGG
TATGCCCGATCCAGGGCGTGCCGAAGCGATAATGTATAGGGTGCTAAACAAAATTGAATATGAAGGTGTGACAGACGTGT
GGCGACTCGCTGCGATGCATCTGCTGGCGATTTCTCGCGGTCATATATTTAATGATGGTAATAAGCGTACGGCACTGTTT
ATCACTCTGCTTTTTTTAAAGCGAAATGGAATTATATTGCCGGCGAATCCAGACTTCGTCGGCATGACCGTCGAGGCGGC
AGCAGGGCAACTTACCCTGGAACAGATTGTCGCGCGCTTGCGCGGATGA
Antitoxin
Download Length: 97 a.a. Molecular weight: 10409.96 Da Isoelectric Point: 6.4594
>AT212932 WP_016968235.1 NZ_CP081490:6137459-6137749 [Pseudomonas protegens]
MHTPVTRFDAAEYLKTPEDMVAYLDACFEEDAGDGKLIRAALNDIARARGMTQVARDTGLGRESLYKALGSQGNPEFATI
IKVMKALGLKLHVSPA
MHTPVTRFDAAEYLKTPEDMVAYLDACFEEDAGDGKLIRAALNDIARARGMTQVARDTGLGRESLYKALGSQGNPEFATI
IKVMKALGLKLHVSPA
Download Length: 291 bp
>AT212932 NZ_CP107408:326754-326975 [Klebsiella pneumoniae]
ATGAGAACGGTTAACTATAGCGAAGCCCGGCAAAATCTGGCCGATGTGCTGGAAAGCGCAGTGACAGGTGTACCTGTGAC
CATTACCCGTCGTGGGCATAAATCTGCAGTCATCATTAGTGCAGAAGAGTTTGAACGCTACCAGACGGCCAGAATGGATG
ATGAGTTCGCGGCTATCATGGCGGTTCATGGTGATGAGATCAGGGAGCTTGCGGATAAATGA
ATGAGAACGGTTAACTATAGCGAAGCCCGGCAAAATCTGGCCGATGTGCTGGAAAGCGCAGTGACAGGTGTACCTGTGAC
CATTACCCGTCGTGGGCATAAATCTGCAGTCATCATTAGTGCAGAAGAGTTTGAACGCTACCAGACGGCCAGAATGGATG
ATGAGTTCGCGGCTATCATGGCGGTTCATGGTGATGAGATCAGGGAGCTTGCGGATAAATGA