Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1783776..1784047 | Replicon | chromosome |
| Accession | NZ_CP081489 | ||
| Organism | Escherichia coli BL21(DE3) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1783906..1784009 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1783776..1784047 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5T46_RS08455 | 1780332..1780994 | - | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
| K5T46_RS08460 | 1781018..1781674 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K5T46_RS08465 | 1781776..1782006 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K5T46_RS08470 | 1782145..1782519 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K5T46_RS08475 | 1782523..1783395 | + | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| K5T46_RS08480 | 1783408..1783749 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1783776..1784047 | - | 272 | - | - | Antitoxin |
| - | 1783906..1784009 | + | 104 | - | - | Toxin |
| K5T46_RS08485 | 1784144..1784800 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K5T46_RS08490 | 1784801..1784992 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K5T46_RS08495 | 1785097..1785333 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K5T46_RS08500 | 1785451..1786890 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T212904 NZ_CP081489:1783906-1784009 [Escherichia coli BL21(DE3)]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT212904 NZ_CP081489:c1784047-1783776 [Escherichia coli BL21(DE3)]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
