Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2278739..2278907 | Replicon | chromosome |
| Accession | NZ_CP081351 | ||
| Organism | Klebsiella michiganensis strain CCRI-24235 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2278797..2278900 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2278739..2278907 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Km24235_RS10910 (Km24235_2152) | 2273866..2275926 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| Km24235_RS10915 (Km24235_2153) | 2275933..2276592 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| Km24235_RS10920 (Km24235_2154) | 2276671..2276901 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| Km24235_RS10925 (Km24235_2155) | 2277037..2277411 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| Km24235_RS10930 (Km24235_2156) | 2277416..2278285 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| Km24235_RS10935 (Km24235_2157) | 2278302..2278640 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2278739..2278907 | - | 169 | - | - | Antitoxin |
| - | 2278797..2278900 | + | 104 | - | - | Toxin |
| Km24235_RS10940 (Km24235_2158) | 2279025..2279984 | - | 960 | WP_042945476.1 | spore coat protein U domain-containing protein | - |
| Km24235_RS10945 (Km24235_2159) | 2279999..2282329 | - | 2331 | WP_195377939.1 | fimbria/pilus outer membrane usher protein | - |
| Km24235_RS10950 (Km24235_2160) | 2282332..2283096 | - | 765 | WP_222582357.1 | molecular chaperone | - |
| Km24235_RS10955 (Km24235_2161) | 2283115..2283633 | - | 519 | WP_064358186.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T212850 NZ_CP081351:2278797-2278900 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT212850 NZ_CP081351:c2278907-2278739 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
