Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 150090..150595 Replicon chromosome
Accession NZ_CP081346
Organism Pseudomonas aeruginosa strain SE5419

Toxin (Protein)


Gene name parE Uniprot ID V6A7K8
Locus tag K5B69_RS00680 Protein ID WP_003083773.1
Coordinates 150090..150371 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A1C7BDS9
Locus tag K5B69_RS00685 Protein ID WP_003083775.1
Coordinates 150368..150595 (-) Length 76 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K5B69_RS00655 (K5B69_00655) 145341..146690 + 1350 WP_003142411.1 C4-dicarboxylate transporter DctA -
K5B69_RS00660 (K5B69_00660) 146739..147425 + 687 WP_003083762.1 FadR/GntR family transcriptional regulator -
K5B69_RS00665 (K5B69_00665) 147526..148260 + 735 WP_004346926.1 GntR family transcriptional regulator -
K5B69_RS00670 (K5B69_00670) 148440..148850 + 411 WP_003101225.1 aegerolysin family protein -
K5B69_RS00675 (K5B69_00675) 148882..149790 - 909 WP_003083769.1 LysR family transcriptional regulator -
K5B69_RS00680 (K5B69_00680) 150090..150371 - 282 WP_003083773.1 type II toxin-antitoxin system toxin ParE Toxin
K5B69_RS00685 (K5B69_00685) 150368..150595 - 228 WP_003083775.1 CopG family ribbon-helix-helix protein Antitoxin
K5B69_RS00690 (K5B69_00690) 150771..151391 - 621 WP_003101226.1 hypothetical protein -
K5B69_RS00695 (K5B69_00695) 151492..151992 + 501 WP_003112629.1 LEA type 2 family protein -
K5B69_RS00700 (K5B69_00700) 152065..152406 + 342 WP_003101229.1 zinc ribbon domain-containing protein YjdM -
K5B69_RS00705 (K5B69_00705) 152488..153915 - 1428 WP_003083784.1 GABA permease -
K5B69_RS00710 (K5B69_00710) 154084..155577 - 1494 WP_003101230.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 94 a.a.        Molecular weight: 10462.19 Da        Isoelectric Point: 10.0435

>T212837 WP_003083773.1 NZ_CP081346:c150371-150090 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP

Download         Length: 282 bp

>T212837 NZ_CP107373:171896-172339 [Klebsiella pneumoniae]
ATGAAGAAAACCTGGATGCTCGACACTAACATCTGCTCGTTCATCATGCGCGAGCAGCCGGCAGCGGTGCTGAAGCGCCT
GGAACAGGCGGTGCTGCGCGGTGATCGCATCGTGGTCTCGGCCGTGACGTATGCCGAGATGCGCTTCGGCGCCACCGGCC
CGAAGGCCTCGCCGCGCCATATTCAGCTGGTCGACGCGTTCTGCGCGCGCCTCGATGCCATCCTGCCCTGGGACCGGGCC
GCGGTGGACGCCACGACGGACATCCGGGTGGCGCTGCGCCTCGCCGGGACGCCGATCGGCCCGAACGACACGGCCATTGC
TGGGCACGCTATCGCGGCCGGCGCCGTCCTAGTGACGAACAATGTGAGAGAGTTTGAGCGGGTGCCGGGTCTGGTGCTGG
AAGACTGGGTGAAGAAAGCCGCTCTCTGCAGGGTAATTTCTTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8556.58 Da        Isoelectric Point: 5.5740

>AT212837 WP_003083775.1 NZ_CP081346:c150595-150368 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHTEIEKRWGLQ

Download         Length: 228 bp

>AT212837 NZ_CP107373:171669-171899 [Klebsiella pneumoniae]
ATGCGCACAGTTTCGATATTTAAAAACGGCAATAACCGCGCCATCCGTCTGCCCCGGGACCTGGATTTTGACGGCGTCAG
CGAGCTGGAGATCGTCCGGGAAGGGGACAGCATCATTCTGCGTCCCGTCCGGCCGACCTGGGGCTCGTTCGCGCAGCTGG
ACAGGGCCGCTCCGGACTTTATGGCGGAGCGTGAGGATGTGGTCAGCGATGAAGGACGCTTTGAGCCATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
PDB 6XRW


Antitoxin

Source ID Structure
AlphaFold DB A0A1C7BDS9

References