Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/RHH(antitoxin) |
Location | 150090..150595 | Replicon | chromosome |
Accession | NZ_CP081346 | ||
Organism | Pseudomonas aeruginosa strain SE5419 |
Toxin (Protein)
Gene name | parE | Uniprot ID | V6A7K8 |
Locus tag | K5B69_RS00680 | Protein ID | WP_003083773.1 |
Coordinates | 150090..150371 (-) | Length | 94 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | A0A1C7BDS9 |
Locus tag | K5B69_RS00685 | Protein ID | WP_003083775.1 |
Coordinates | 150368..150595 (-) | Length | 76 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
K5B69_RS00655 (K5B69_00655) | 145341..146690 | + | 1350 | WP_003142411.1 | C4-dicarboxylate transporter DctA | - |
K5B69_RS00660 (K5B69_00660) | 146739..147425 | + | 687 | WP_003083762.1 | FadR/GntR family transcriptional regulator | - |
K5B69_RS00665 (K5B69_00665) | 147526..148260 | + | 735 | WP_004346926.1 | GntR family transcriptional regulator | - |
K5B69_RS00670 (K5B69_00670) | 148440..148850 | + | 411 | WP_003101225.1 | aegerolysin family protein | - |
K5B69_RS00675 (K5B69_00675) | 148882..149790 | - | 909 | WP_003083769.1 | LysR family transcriptional regulator | - |
K5B69_RS00680 (K5B69_00680) | 150090..150371 | - | 282 | WP_003083773.1 | type II toxin-antitoxin system toxin ParE | Toxin |
K5B69_RS00685 (K5B69_00685) | 150368..150595 | - | 228 | WP_003083775.1 | CopG family ribbon-helix-helix protein | Antitoxin |
K5B69_RS00690 (K5B69_00690) | 150771..151391 | - | 621 | WP_003101226.1 | hypothetical protein | - |
K5B69_RS00695 (K5B69_00695) | 151492..151992 | + | 501 | WP_003112629.1 | LEA type 2 family protein | - |
K5B69_RS00700 (K5B69_00700) | 152065..152406 | + | 342 | WP_003101229.1 | zinc ribbon domain-containing protein YjdM | - |
K5B69_RS00705 (K5B69_00705) | 152488..153915 | - | 1428 | WP_003083784.1 | GABA permease | - |
K5B69_RS00710 (K5B69_00710) | 154084..155577 | - | 1494 | WP_003101230.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10462.19 Da Isoelectric Point: 10.0435
>T212837 WP_003083773.1 NZ_CP081346:c150371-150090 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP
Download Length: 282 bp
>T212837 NZ_CP107373:171896-172339 [Klebsiella pneumoniae]
ATGAAGAAAACCTGGATGCTCGACACTAACATCTGCTCGTTCATCATGCGCGAGCAGCCGGCAGCGGTGCTGAAGCGCCT
GGAACAGGCGGTGCTGCGCGGTGATCGCATCGTGGTCTCGGCCGTGACGTATGCCGAGATGCGCTTCGGCGCCACCGGCC
CGAAGGCCTCGCCGCGCCATATTCAGCTGGTCGACGCGTTCTGCGCGCGCCTCGATGCCATCCTGCCCTGGGACCGGGCC
GCGGTGGACGCCACGACGGACATCCGGGTGGCGCTGCGCCTCGCCGGGACGCCGATCGGCCCGAACGACACGGCCATTGC
TGGGCACGCTATCGCGGCCGGCGCCGTCCTAGTGACGAACAATGTGAGAGAGTTTGAGCGGGTGCCGGGTCTGGTGCTGG
AAGACTGGGTGAAGAAAGCCGCTCTCTGCAGGGTAATTTCTTGA
ATGAAGAAAACCTGGATGCTCGACACTAACATCTGCTCGTTCATCATGCGCGAGCAGCCGGCAGCGGTGCTGAAGCGCCT
GGAACAGGCGGTGCTGCGCGGTGATCGCATCGTGGTCTCGGCCGTGACGTATGCCGAGATGCGCTTCGGCGCCACCGGCC
CGAAGGCCTCGCCGCGCCATATTCAGCTGGTCGACGCGTTCTGCGCGCGCCTCGATGCCATCCTGCCCTGGGACCGGGCC
GCGGTGGACGCCACGACGGACATCCGGGTGGCGCTGCGCCTCGCCGGGACGCCGATCGGCCCGAACGACACGGCCATTGC
TGGGCACGCTATCGCGGCCGGCGCCGTCCTAGTGACGAACAATGTGAGAGAGTTTGAGCGGGTGCCGGGTCTGGTGCTGG
AAGACTGGGTGAAGAAAGCCGCTCTCTGCAGGGTAATTTCTTGA
Antitoxin
Download Length: 76 a.a. Molecular weight: 8556.58 Da Isoelectric Point: 5.5740
>AT212837 WP_003083775.1 NZ_CP081346:c150595-150368 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHTEIEKRWGLQ
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHTEIEKRWGLQ
Download Length: 228 bp
>AT212837 NZ_CP107373:171669-171899 [Klebsiella pneumoniae]
ATGCGCACAGTTTCGATATTTAAAAACGGCAATAACCGCGCCATCCGTCTGCCCCGGGACCTGGATTTTGACGGCGTCAG
CGAGCTGGAGATCGTCCGGGAAGGGGACAGCATCATTCTGCGTCCCGTCCGGCCGACCTGGGGCTCGTTCGCGCAGCTGG
ACAGGGCCGCTCCGGACTTTATGGCGGAGCGTGAGGATGTGGTCAGCGATGAAGGACGCTTTGAGCCATGA
ATGCGCACAGTTTCGATATTTAAAAACGGCAATAACCGCGCCATCCGTCTGCCCCGGGACCTGGATTTTGACGGCGTCAG
CGAGCTGGAGATCGTCCGGGAAGGGGACAGCATCATTCTGCGTCCCGTCCGGCCGACCTGGGGCTCGTTCGCGCAGCTGG
ACAGGGCCGCTCCGGACTTTATGGCGGAGCGTGAGGATGTGGTCAGCGATGAAGGACGCTTTGAGCCATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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