Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2059940..2060072 | Replicon | chromosome |
| Accession | NZ_CP081342 | ||
| Organism | Pantoea ananatis strain TZ39 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2059975..2060072 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2059940..2060072 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K4732_RS09540 (K4732_09540) | 2055123..2057195 | + | 2073 | WP_047714944.1 | prolyl oligopeptidase family serine peptidase | - |
| K4732_RS09545 (K4732_09545) | 2057179..2057850 | - | 672 | WP_221611876.1 | exodeoxyribonuclease X | - |
| K4732_RS09550 (K4732_09550) | 2057850..2058080 | - | 231 | WP_019105100.1 | DNA polymerase III subunit theta | - |
| K4732_RS09555 (K4732_09555) | 2058231..2058605 | + | 375 | WP_047714945.1 | copper homeostasis periplasmic binding protein CopC | - |
| K4732_RS09560 (K4732_09560) | 2058610..2059485 | + | 876 | WP_047714946.1 | copper homeostasis membrane protein CopD | - |
| K4732_RS09565 (K4732_09565) | 2059513..2059860 | + | 348 | WP_028723425.1 | YebY family protein | - |
| - | 2059940..2060072 | - | 133 | - | - | Antitoxin |
| - | 2059975..2060072 | + | 98 | - | - | Toxin |
| K4732_RS09570 (K4732_09570) | 2060212..2061756 | - | 1545 | WP_221611878.1 | methyl-accepting chemotaxis protein | - |
| K4732_RS09575 (K4732_09575) | 2062249..2062953 | - | 705 | WP_047714948.1 | GntR family transcriptional regulator | - |
| K4732_RS09580 (K4732_09580) | 2063234..2064856 | + | 1623 | WP_221611880.1 | alpha-glucoside-specific PTS transporter subunit IIBC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 98 bp
>T212819 NZ_CP081342:2059975-2060072 [Pantoea ananatis]
GCAAGGCGAAAGCCTCTATCAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
GCAAGGCGAAAGCCTCTATCAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 133 bp
>AT212819 NZ_CP081342:c2060072-2059940 [Pantoea ananatis]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTGA
TAGAGGCTTTCGCCTTGCTTTTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTGA
TAGAGGCTTTCGCCTTGCTTTTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
