Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | ccdAB/CcdA(antitoxin) |
| Location | 108351..108901 | Replicon | plasmid pCCRI24236-1 |
| Accession | NZ_CP081315 | ||
| Organism | Citrobacter farmeri strain CCRI-24236 | ||
Toxin (Protein)
| Gene name | ccdB | Uniprot ID | S1EZ93 |
| Locus tag | Cf24236_RS24545 | Protein ID | WP_007372286.1 |
| Coordinates | 108351..108659 (-) | Length | 103 a.a. |
Antitoxin (Protein)
| Gene name | ccdA | Uniprot ID | S1FMC3 |
| Locus tag | Cf24236_RS24550 | Protein ID | WP_007372285.1 |
| Coordinates | 108662..108901 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Cf24236_RS24500 (Cf24236_5130) | 103433..103876 | - | 444 | WP_007372295.1 | hypothetical protein | - |
| Cf24236_RS24505 (Cf24236_5131) | 104114..104452 | + | 339 | WP_007372294.1 | hypothetical protein | - |
| Cf24236_RS24510 (Cf24236_5132) | 104815..105141 | - | 327 | WP_007372293.1 | hypothetical protein | - |
| Cf24236_RS24515 (Cf24236_5133) | 105225..105623 | - | 399 | WP_222563844.1 | hypothetical protein | - |
| Cf24236_RS24520 (Cf24236_5134) | 105634..105921 | - | 288 | WP_016241556.1 | hypothetical protein | - |
| Cf24236_RS24525 (Cf24236_5136) | 106223..106753 | - | 531 | WP_020996213.1 | HAD domain-containing protein | - |
| Cf24236_RS24530 (Cf24236_5137) | 106776..107393 | - | 618 | WP_007372289.1 | hypothetical protein | - |
| Cf24236_RS24535 (Cf24236_5138) | 107463..108017 | - | 555 | WP_007372288.1 | hypothetical protein | - |
| Cf24236_RS24540 (Cf24236_5139) | 108172..108330 | - | 159 | WP_016241558.1 | hypothetical protein | - |
| Cf24236_RS24545 (Cf24236_5140) | 108351..108659 | - | 309 | WP_007372286.1 | CcdB family protein | Toxin |
| Cf24236_RS24550 (Cf24236_5141) | 108662..108901 | - | 240 | WP_007372285.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin |
| Cf24236_RS24555 (Cf24236_5142) | 109040..109504 | - | 465 | WP_008786596.1 | hypothetical protein | - |
| Cf24236_RS24560 (Cf24236_5143) | 109501..110175 | - | 675 | WP_008786597.1 | hypothetical protein | - |
| Cf24236_RS24565 (Cf24236_5145) | 110633..111265 | - | 633 | WP_007372282.1 | hypothetical protein | - |
| Cf24236_RS24570 (Cf24236_5146) | 111281..111421 | - | 141 | WP_007372281.1 | hypothetical protein | - |
| Cf24236_RS24575 (Cf24236_5147) | 111769..112473 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..198299 | 198299 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 a.a. Molecular weight: 11351.17 Da Isoelectric Point: 8.5044
>T212818 WP_007372286.1 NZ_CP081315:c108659-108351 [Citrobacter farmeri]
MQYTVYRNPGNSQAYPYLLDIQSDIIGELNTRLVIPLHRLKKGASAPVARLTPVIQVEGNDVILMTHEMASVRVKQLGQA
VMDASPFRHTIKSAVDFLLDGF
MQYTVYRNPGNSQAYPYLLDIQSDIIGELNTRLVIPLHRLKKGASAPVARLTPVIQVEGNDVILMTHEMASVRVKQLGQA
VMDASPFRHTIKSAVDFLLDGF
Download Length: 309 bp
>T212818 NZ_CP107367:c5368683-5368300 [Klebsiella pneumoniae]
ATGACCTCCGGATCTGCGCTTTTTGATACCAATATTCTTATTGATTTATTTAGCGGGCGTCGCGAAGCCAAACAGGCGCT
GGAGGCCTGGCCACCGCAGAATGCGATCAGTCTGATTACCTGGATGGAGGTGATGGTTGGCGCTAAAAAATATCACCAGG
AGCAGCGCACGCGAATGGCGCTGAGCACCTTTAATATCATTAACATCTCACAGGATATTGCAGAGCGAAGCGTTGCGCTG
CGGCAGGAGTATAAGCTTAAGCTGCCGGATGCCATCATTCTGGCGACGGCGCAACTCCATCGTCTGGAACTAATTACGCG
GAATACGAAGGATTTTGCCGGTATTCCTGGCGTAGTCACGCCGTACGAAATCCACCCTGAATAA
ATGACCTCCGGATCTGCGCTTTTTGATACCAATATTCTTATTGATTTATTTAGCGGGCGTCGCGAAGCCAAACAGGCGCT
GGAGGCCTGGCCACCGCAGAATGCGATCAGTCTGATTACCTGGATGGAGGTGATGGTTGGCGCTAAAAAATATCACCAGG
AGCAGCGCACGCGAATGGCGCTGAGCACCTTTAATATCATTAACATCTCACAGGATATTGCAGAGCGAAGCGTTGCGCTG
CGGCAGGAGTATAAGCTTAAGCTGCCGGATGCCATCATTCTGGCGACGGCGCAACTCCATCGTCTGGAACTAATTACGCG
GAATACGAAGGATTTTGCCGGTATTCCTGGCGTAGTCACGCCGTACGAAATCCACCCTGAATAA
Antitoxin
Download Length: 80 a.a. Molecular weight: 8784.97 Da Isoelectric Point: 8.6387
>AT212818 WP_007372285.1 NZ_CP081315:c108901-108662 [Citrobacter farmeri]
MQATAARQKKTVSVTLEPMLVQQAKDAGINLSATLAEALQSKLKASAAEEWKRQNRAGIQELNRITEEHGLLSDEYRTF
MQATAARQKKTVSVTLEPMLVQQAKDAGINLSATLAEALQSKLKASAAEEWKRQNRAGIQELNRITEEHGLLSDEYRTF
Download Length: 240 bp
>AT212818 NZ_CP107367:c5368925-5368683 [Klebsiella pneumoniae]
ATGATGGCTGAAAGGGATATGGGCAGAATTCTTCTCGATTTATCAGACGATGTCATTCAACGTCTCGATGACCTCAAAGT
GCAGCGTAACATTCCGCGAGCGGAACTGTTACGTGAAGCGGTTGAACAATATCTGGAGAAACAAGATCGAGCTAAAGATA
CCATCTCCAGTGCGCTGGGTCTGTGGCAAGACTGCGAAGAAGACGGCATGGAATATCAACGTCAGCTACGCAAGGAGTGG
TAA
ATGATGGCTGAAAGGGATATGGGCAGAATTCTTCTCGATTTATCAGACGATGTCATTCAACGTCTCGATGACCTCAAAGT
GCAGCGTAACATTCCGCGAGCGGAACTGTTACGTGAAGCGGTTGAACAATATCTGGAGAAACAAGATCGAGCTAAAGATA
CCATCTCCAGTGCGCTGGGTCTGTGGCAAGACTGCGAAGAAGACGGCATGGAATATCAACGTCAGCTACGCAAGGAGTGG
TAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|