Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2882982..2883186 | Replicon | chromosome |
| Accession | NZ_CP081314 | ||
| Organism | Citrobacter farmeri strain CCRI-24236 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2882988..2883091 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2882982..2883186 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Cf24236_RS13600 (Cf24236_2708) | 2880094..2881533 | + | 1440 | WP_195293622.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| Cf24236_RS13605 (Cf24236_2709) | 2881648..2881884 | + | 237 | WP_167382411.1 | YebV family protein | - |
| Cf24236_RS13610 (Cf24236_2710) | 2881985..2882176 | + | 192 | WP_042318465.1 | YebW family protein | - |
| Cf24236_RS13615 (Cf24236_2711) | 2882177..2882839 | - | 663 | WP_195293621.1 | protein-serine/threonine phosphatase | - |
| - | 2882982..2883186 | + | 205 | - | - | Antitoxin |
| - | 2882988..2883091 | - | 104 | - | - | Toxin |
| Cf24236_RS13620 (Cf24236_2712) | 2883247..2883585 | - | 339 | WP_216525708.1 | YebY family protein | - |
| Cf24236_RS13625 (Cf24236_2713) | 2883602..2884474 | - | 873 | WP_216525707.1 | copper homeostasis membrane protein CopD | - |
| Cf24236_RS13630 (Cf24236_2714) | 2884477..2884851 | - | 375 | WP_195293619.1 | CopC domain-containing protein YobA | - |
| Cf24236_RS13635 (Cf24236_2715) | 2884989..2885219 | + | 231 | WP_216525706.1 | DNA polymerase III subunit theta | - |
| Cf24236_RS13640 (Cf24236_2716) | 2885327..2885983 | + | 657 | WP_195504581.1 | carbon-nitrogen hydrolase family protein | - |
| Cf24236_RS13645 (Cf24236_2717) | 2886007..2886669 | + | 663 | WP_195504580.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T212802 NZ_CP081314:c2883091-2882988 [Citrobacter farmeri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 205 bp
>AT212802 NZ_CP081314:2882982-2883186 [Citrobacter farmeri]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGGCTTATGCGG
TCGGAAAAAAACGGCGATGGTCACTGCCTGAAATGTAAAAACCGC
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGGCTTATGCGG
TCGGAAAAAAACGGCGATGGTCACTGCCTGAAATGTAAAAACCGC
