Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2058144..2058415 | Replicon | chromosome |
| Accession | NZ_CP081306 | ||
| Organism | Escherichia coli strain Ec1079 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2058274..2058377 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2058144..2058415 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5A55_RS09980 | 2054699..2055361 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K5A55_RS09985 | 2055385..2056041 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K5A55_RS09990 | 2056143..2056373 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K5A55_RS09995 | 2056512..2056886 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| K5A55_RS10000 | 2056890..2057762 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| K5A55_RS10005 | 2057775..2058116 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2058144..2058415 | - | 272 | - | - | Antitoxin |
| - | 2058274..2058377 | + | 104 | - | - | Toxin |
| K5A55_RS10010 | 2058512..2059168 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K5A55_RS10015 | 2059169..2059360 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K5A55_RS10020 | 2059465..2059701 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K5A55_RS10025 | 2059819..2061258 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2015231..2074253 | 59022 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T212777 NZ_CP081306:2058274-2058377 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT212777 NZ_CP081306:c2058415-2058144 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
