Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 67984..68255 Replicon chromosome
Accession NZ_CP081009
Organism Escherichia coli strain Stbl4

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 68114..68217 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 67984..68255 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K3830_RS00335 64539..65201 - 663 WP_000944256.1 exodeoxyribonuclease X -
K3830_RS00340 65225..65881 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein YobB -
K3830_RS00345 65983..66213 - 231 WP_000916763.1 DNA polymerase III subunit theta -
K3830_RS00350 66352..66726 + 375 WP_000168747.1 CopC domain-containing protein YobA -
K3830_RS00355 66730..67602 + 873 WP_000879289.1 copper homeostasis membrane protein CopD -
K3830_RS00360 67615..67956 + 342 WP_000976476.1 YebY family protein -
- 67984..68255 - 272 - - Antitoxin
- 68114..68217 + 104 - - Toxin
K3830_RS00365 68352..69008 + 657 WP_000812724.1 protein-serine/threonine phosphatase -
K3830_RS00370 69009..69200 - 192 WP_000457842.1 YebW family protein -
K3830_RS00375 69305..69541 - 237 WP_001295499.1 YebV family protein -
K3830_RS00380 69659..71098 - 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T212514 NZ_CP081009:68114-68217 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT212514 NZ_CP081009:c68255-67984 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References