Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1992914..1993185 | Replicon | chromosome |
| Accession | NZ_CP081008 | ||
| Organism | Escherichia coli strain XL10-gold-ultracompetent | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1993044..1993147 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1992914..1993185 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K3831_RS09550 | 1989469..1990131 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K3831_RS09555 | 1990155..1990811 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K3831_RS09560 | 1990913..1991143 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K3831_RS09565 | 1991282..1991656 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K3831_RS09570 | 1991660..1992532 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| K3831_RS09575 | 1992545..1992886 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1992914..1993185 | - | 272 | - | - | Antitoxin |
| - | 1993044..1993147 | + | 104 | - | - | Toxin |
| K3831_RS09580 | 1993282..1993938 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K3831_RS09585 | 1993939..1994130 | - | 192 | WP_000457842.1 | YebW family protein | - |
| K3831_RS09590 | 1994235..1994471 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K3831_RS09595 | 1994589..1996028 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T212488 NZ_CP081008:1993044-1993147 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT212488 NZ_CP081008:c1993185-1992914 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
