Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2761746..2762017 | Replicon | chromosome |
| Accession | NZ_CP081007 | ||
| Organism | Escherichia coli strain XL1-Blue | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2761876..2761979 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2761746..2762017 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K3826_RS13050 | 2758301..2758963 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K3826_RS13055 | 2758987..2759643 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K3826_RS13060 | 2759745..2759975 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K3826_RS13065 | 2760114..2760488 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K3826_RS13070 | 2760492..2761364 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| K3826_RS13075 | 2761377..2761718 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2761746..2762017 | - | 272 | - | - | Antitoxin |
| - | 2761876..2761979 | + | 104 | - | - | Toxin |
| K3826_RS13080 | 2762114..2762770 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K3826_RS13085 | 2762771..2762962 | - | 192 | WP_000457842.1 | YebW family protein | - |
| K3826_RS13090 | 2763067..2763303 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K3826_RS13095 | 2763421..2764860 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T212446 NZ_CP081007:2761876-2761979 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT212446 NZ_CP081007:c2762017-2761746 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
