Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1071081..1071224 | Replicon | chromosome |
| Accession | NZ_CP080960 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain ISP2825 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1071120..1071222 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1071081..1071224 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K3U68_RS05010 (K3U68_05010) | 1067505..1068203 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K3U68_RS05015 (K3U68_05015) | 1068227..1068883 | - | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| K3U68_RS05020 (K3U68_05020) | 1068991..1069221 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K3U68_RS05025 (K3U68_05025) | 1069359..1069733 | + | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| K3U68_RS05030 (K3U68_05030) | 1069734..1070609 | + | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| K3U68_RS05035 (K3U68_05035) | 1070626..1070979 | + | 354 | WP_000722366.1 | YebY family protein | - |
| - | 1071081..1071224 | - | 144 | - | - | Antitoxin |
| - | 1071120..1071222 | + | 103 | - | - | Toxin |
| K3U68_RS05040 (K3U68_05040) | 1071343..1071651 | - | 309 | Protein_986 | tyrosine-type recombinase/integrase | - |
| K3U68_RS05045 (K3U68_05045) | 1071650..1072011 | - | 362 | Protein_987 | recombinase RecT | - |
| K3U68_RS05050 (K3U68_05050) | 1072012..1072122 | + | 111 | Protein_988 | replication protein | - |
| K3U68_RS05055 (K3U68_05055) | 1072135..1072530 | + | 396 | Protein_989 | DUF977 family protein | - |
| K3U68_RS05060 (K3U68_05060) | 1072816..1073946 | - | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1065417..1071817 | 6400 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T212374 NZ_CP080960:1071120-1071222 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT212374 NZ_CP080960:c1071224-1071081 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
