Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2783102..2783249 | Replicon | chromosome |
| Accession | NZ_CP080958 | ||
| Organism | Citrobacter amalonaticus strain C3H | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2783106..2783209 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2783102..2783249 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K1713_RS13285 (K1713_13285) | 2780210..2781649 | + | 1440 | WP_200015711.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K1713_RS13290 (K1713_13290) | 2781764..2782000 | + | 237 | WP_161215572.1 | YebV family protein | - |
| K1713_RS13295 (K1713_13295) | 2782102..2782293 | + | 192 | WP_043000391.1 | YebW family protein | - |
| K1713_RS13300 (K1713_13300) | 2782294..2782956 | - | 663 | WP_043000390.1 | protein-serine/threonine phosphatase | - |
| - | 2783102..2783249 | + | 148 | - | - | Antitoxin |
| - | 2783106..2783209 | - | 104 | - | - | Toxin |
| K1713_RS13305 (K1713_13305) | 2783365..2783703 | - | 339 | WP_043000379.1 | YebY family protein | - |
| K1713_RS13310 (K1713_13310) | 2783720..2784592 | - | 873 | WP_200015712.1 | copper homeostasis membrane protein CopD | - |
| K1713_RS13315 (K1713_13315) | 2784595..2784969 | - | 375 | WP_044257639.1 | CopC domain-containing protein YobA | - |
| K1713_RS13320 (K1713_13320) | 2785107..2785337 | + | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| K1713_RS13325 (K1713_13325) | 2785446..2786108 | + | 663 | WP_044257638.1 | carbon-nitrogen hydrolase family protein | - |
| K1713_RS13330 (K1713_13330) | 2786132..2786794 | + | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T212363 NZ_CP080958:c2783209-2783106 [Citrobacter amalonaticus]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT212363 NZ_CP080958:2783102-2783249 [Citrobacter amalonaticus]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
