Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1384961..1385195 | Replicon | chromosome |
| Accession | NC_007384 | ||
| Organism | Shigella sonnei Ss046 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1385091..1385194 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1384961..1385195 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSON_RS07170 | 1381516..1382178 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| SSON_RS07175 | 1382202..1382858 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| SSON_RS07180 | 1382960..1383190 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| SSON_RS07185 | 1383329..1383703 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| SSON_RS07190 | 1383707..1384579 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| SSON_RS07195 | 1384592..1384933 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1384961..1385195 | - | 235 | - | - | Antitoxin |
| - | 1385091..1385194 | + | 104 | - | - | Toxin |
| SSON_RS07205 | 1385326..1386402 | - | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| SSON_RS07210 | 1386439..1386684 | - | 246 | Protein_1347 | IS1 family transposase | - |
| SSON_RS30970 | 1387973..1388427 | - | 455 | Protein_1349 | IS1-like element IS1A family transposase | - |
| SSON_RS27845 | 1388456..1388716 | - | 261 | WP_077447296.1 | excisionase | - |
| SSON_RS07240 | 1388861..1390017 | + | 1157 | WP_087879964.1 | IS3-like element IS600 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 1379459..1412112 | 32653 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T21236 NC_007384:1385091-1385194 [Shigella sonnei Ss046]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT21236 NC_007384:c1385195-1384961 [Shigella sonnei Ss046]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
