Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | tsbAT/- |
Location | 1945439..1946215 | Replicon | chromosome |
Accession | NZ_CP080770 | ||
Organism | Staphylococcus aureus strain HL23187 |
Toxin (Protein)
Gene name | tsbT | Uniprot ID | X5E2E6 |
Locus tag | HLV54_RS09390 | Protein ID | WP_000031108.1 |
Coordinates | 1945439..1945591 (-) | Length | 51 a.a. |
Antitoxin (Protein)
Gene name | tsbA | Uniprot ID | A0A6B1RP77 |
Locus tag | HLV54_RS09395 | Protein ID | WP_001251218.1 |
Coordinates | 1945616..1946215 (-) | Length | 200 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HLV54_RS09375 (HLV54_001875) | 1941514..1942335 | + | 822 | WP_000669384.1 | RluA family pseudouridine synthase | - |
HLV54_RS09380 (HLV54_001876) | 1942800..1944185 | - | 1386 | WP_000116233.1 | class II fumarate hydratase | - |
HLV54_RS09385 (HLV54_001877) | 1944381..1944776 | - | 396 | WP_000901022.1 | hypothetical protein | - |
HLV54_RS09390 (HLV54_001878) | 1945439..1945591 | - | 153 | WP_000031108.1 | SAS053 family protein | Toxin |
HLV54_RS09395 (HLV54_001879) | 1945616..1946215 | - | 600 | WP_001251218.1 | glucosamine-6-phosphate isomerase | Antitoxin |
HLV54_RS09400 (HLV54_001880) | 1946374..1946844 | - | 471 | WP_000181394.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
HLV54_RS09405 (HLV54_001881) | 1946849..1947976 | - | 1128 | WP_000379977.1 | tRNA epoxyqueuosine(34) reductase QueG | - |
HLV54_RS09410 (HLV54_001882) | 1948127..1948849 | - | 723 | WP_000590809.1 | amino acid ABC transporter ATP-binding protein | - |
HLV54_RS09415 (HLV54_001883) | 1948842..1950299 | - | 1458 | WP_000649908.1 | ABC transporter permease subunit | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 51 a.a. Molecular weight: 5936.28 Da Isoelectric Point: 3.8962
>T212352 WP_000031108.1 NZ_CP080770:c1945591-1945439 [Staphylococcus aureus]
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
Download Length: 153 bp
>T212352 NZ_CP107004:183125-183232 [Escherichia coli]
ATGACGTTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA
ATGACGTTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA
Antitoxin
Download Length: 200 a.a. Molecular weight: 22357.50 Da Isoelectric Point: 5.1445
>AT212352 WP_001251218.1 NZ_CP080770:c1946215-1945616 [Staphylococcus aureus]
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNIEKHAVDFSQINILDYDDKKSYFEALGV
PAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFIVVTGANKRDVVEKLYQENGK
TSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNIEKHAVDFSQINILDYDDKKSYFEALGV
PAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFIVVTGANKRDVVEKLYQENGK
TSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
Download Length: 600 bp
>AT212352 NZ_CP107004:c183077-183011 [Escherichia coli]
GGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCT
GGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | X5E2E6 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A6B1RP77 |