Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2773187..2773458 | Replicon | chromosome |
| Accession | NZ_CP080620 | ||
| Organism | Escherichia coli strain TOP10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2773317..2773420 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2773187..2773458 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K3F56_RS13215 | 2769742..2770404 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K3F56_RS13220 | 2770428..2771084 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K3F56_RS13225 | 2771186..2771416 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K3F56_RS13230 | 2771555..2771929 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K3F56_RS13235 | 2771933..2772805 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| K3F56_RS13240 | 2772818..2773159 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2773187..2773458 | - | 272 | - | - | Antitoxin |
| - | 2773317..2773420 | + | 104 | - | - | Toxin |
| K3F56_RS13245 | 2773555..2774211 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K3F56_RS13250 | 2774212..2774403 | - | 192 | WP_000457842.1 | YebW family protein | - |
| K3F56_RS13255 | 2774508..2774744 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K3F56_RS13260 | 2774862..2776301 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T212274 NZ_CP080620:2773317-2773420 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT212274 NZ_CP080620:c2773458-2773187 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
