Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2527697..2527865 | Replicon | chromosome |
| Accession | NZ_CP080594 | ||
| Organism | Cronobacter sakazakii strain Crono-684 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2527700..2527803 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2527697..2527865 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K2Y34_RS11855 (K2Y34_11810) | 2523072..2524514 | + | 1443 | WP_029464240.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K2Y34_RS11860 (K2Y34_11815) | 2524626..2524865 | + | 240 | WP_004386676.1 | YebV family protein | - |
| K2Y34_RS11865 (K2Y34_11820) | 2524990..2525181 | + | 192 | WP_004386675.1 | YebW family protein | - |
| K2Y34_RS11870 (K2Y34_11825) | 2525182..2525826 | - | 645 | WP_004386674.1 | metallophosphoesterase | - |
| K2Y34_RS11875 (K2Y34_11835) | 2526185..2526277 | - | 93 | WP_004386672.1 | hypothetical protein | - |
| K2Y34_RS11880 (K2Y34_11840) | 2526623..2526958 | - | 336 | WP_004386671.1 | hypothetical protein | - |
| K2Y34_RS11885 (K2Y34_11845) | 2526912..2527241 | - | 330 | WP_012124471.1 | hypothetical protein | - |
| - | 2527697..2527865 | + | 169 | - | - | Antitoxin |
| - | 2527700..2527803 | - | 104 | - | - | Toxin |
| K2Y34_RS11890 (K2Y34_11850) | 2527942..2528280 | - | 339 | WP_004386669.1 | YebY family protein | - |
| K2Y34_RS11895 (K2Y34_11855) | 2528295..2529164 | - | 870 | WP_015386606.1 | copper homeostasis membrane protein CopD | - |
| K2Y34_RS11900 (K2Y34_11860) | 2529169..2529543 | - | 375 | WP_004386667.1 | CopC domain-containing protein YobA | - |
| K2Y34_RS11905 (K2Y34_11865) | 2529690..2529920 | + | 231 | WP_004386666.1 | DNA polymerase III subunit theta | - |
| K2Y34_RS11910 (K2Y34_11870) | 2529993..2530655 | + | 663 | WP_004386664.1 | exodeoxyribonuclease X | - |
| K2Y34_RS11915 (K2Y34_11875) | 2530652..2532715 | - | 2064 | WP_004386663.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T212244 NZ_CP080594:c2527803-2527700 [Cronobacter sakazakii]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT212244 NZ_CP080594:2527697-2527865 [Cronobacter sakazakii]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
