Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2533166..2533334 | Replicon | chromosome |
| Accession | NZ_CP080591 | ||
| Organism | Cronobacter sakazakii strain Crono-589 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2533169..2533272 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2533166..2533334 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K1721_RS11930 (K1721_11905) | 2528545..2529987 | + | 1443 | WP_032989335.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K1721_RS11935 (K1721_11910) | 2530099..2530338 | + | 240 | WP_004386676.1 | YebV family protein | - |
| K1721_RS11940 (K1721_11915) | 2530463..2530654 | + | 192 | WP_004386675.1 | YebW family protein | - |
| K1721_RS11945 (K1721_11920) | 2530655..2531299 | - | 645 | WP_032989334.1 | metallophosphoesterase | - |
| K1721_RS11950 (K1721_11930) | 2531657..2531749 | - | 93 | WP_004386672.1 | hypothetical protein | - |
| K1721_RS11955 (K1721_11935) | 2532095..2532430 | - | 336 | WP_004386671.1 | hypothetical protein | - |
| K1721_RS11960 (K1721_11940) | 2532384..2532944 | - | 561 | WP_032989333.1 | hypothetical protein | - |
| - | 2533166..2533334 | + | 169 | - | - | Antitoxin |
| - | 2533169..2533272 | - | 104 | - | - | Toxin |
| K1721_RS11965 (K1721_11945) | 2533411..2533749 | - | 339 | WP_004386669.1 | YebY family protein | - |
| K1721_RS11970 (K1721_11950) | 2533764..2534633 | - | 870 | WP_032989331.1 | copper homeostasis membrane protein CopD | - |
| K1721_RS11975 (K1721_11955) | 2534638..2535012 | - | 375 | WP_032989330.1 | CopC domain-containing protein YobA | - |
| K1721_RS11980 (K1721_11960) | 2535159..2535389 | + | 231 | WP_007698883.1 | DNA polymerase III subunit theta | - |
| K1721_RS11985 (K1721_11965) | 2535461..2536123 | + | 663 | WP_004386664.1 | exodeoxyribonuclease X | - |
| K1721_RS11990 (K1721_11970) | 2536120..2538183 | - | 2064 | WP_004386663.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T212226 NZ_CP080591:c2533272-2533169 [Cronobacter sakazakii]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT212226 NZ_CP080591:2533166-2533334 [Cronobacter sakazakii]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
