212216

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 932756..934386 Replicon chromosome
Accession NZ_CP080589
Organism Xanthomonas oryzae pv. oryzicola strain GX01

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag K2I41_RS04525 Protein ID WP_263433147.1
Coordinates 933826..934386 (-) Length 187 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag K2I41_RS04520 Protein ID WP_149621355.1
Coordinates 932756..933829 (-) Length 358 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K2I41_RS04500 (K2I41_04500) 928631..928957 - 327 WP_024710580.1 hypothetical protein -
K2I41_RS04505 (K2I41_04505) 929261..930541 - 1281 WP_024710581.1 amidohydrolase family protein -
K2I41_RS04510 (K2I41_04510) 930538..931947 - 1410 WP_024710582.1 amidohydrolase -
K2I41_RS04515 (K2I41_04515) 932087..932647 + 561 WP_044750878.1 DUF924 family protein -
K2I41_RS04520 (K2I41_04520) 932756..933829 - 1074 WP_149621355.1 macro domain-containing protein Antitoxin
K2I41_RS04525 (K2I41_04525) 933826..934386 - 561 WP_263433147.1 DUF4433 domain-containing protein Toxin
K2I41_RS04530 (K2I41_04530) 934810..935736 - 927 WP_024710586.1 Grx4 family monothiol glutaredoxin -
K2I41_RS04535 (K2I41_04535) 935782..936573 + 792 WP_024710587.1 polysaccharide deacetylase family protein -
K2I41_RS04545 (K2I41_04545) 936877..937548 - 672 WP_024745633.1 class I SAM-dependent methyltransferase -
K2I41_RS04550 (K2I41_04550) 937871..938521 - 651 WP_024710589.1 SGNH/GDSL hydrolase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(5-185)

Antitoxin

Macro domain

(18-129)


Sequences

Toxin        


Download         Length: 187 a.a.        Molecular weight: 21601.45 Da        Isoelectric Point: 7.5411

>T212216 WP_263433147.1 NZ_CP080589:c934386-933826 [Xanthomonas oryzae pv. oryzicola]
MHCGNAAVQSSSWVSIGNPELIDKRSSHPVPRPPGGFSNDYVPFYFTPFLPMLRNIHTAWGGIQRRPNEDIVILVSSLHH
VAERRWPFLFTDSHAYCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDPAKFERYQAEALIHRHVPLDGLRGIVCHTDGL
QQTIERQLQERNLKLPVHTRTGWYFR

Download         Length: 561 bp

>T212216 NZ_CP106998:1800235-1800486 [Escherichia coli]
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGCTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACGGAAAAGGAC
ATCATTGAGTGA

Antitoxin


Download         Length: 358 a.a.        Molecular weight: 40084.13 Da        Isoelectric Point: 6.0089

>AT212216 WP_149621355.1 NZ_CP080589:c933829-932756 [Xanthomonas oryzae pv. oryzicola]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHRFLIENKVKSIAIPPLGAGNGGLDRADVRPLIEEVLAGLDTDILVFEPTLKYQNVAKRSG
VEKLTPARALIAELVRRYWVLGMECGLLEIQKLAWFLERNIERAGLPELDLRFSAHKYGPYADRLRHLLNGLDGSYLHCD
KRISDADPLDVIWFDDNRKSFVQTYLLKSEAKQYIPALEATAALIDGFESPFGMELLATVDWLIVQEGISAQVADVREGI
RHWPGDQEAAARKDRLFDDRALGIALKRLASGAIAVA

Download         Length: 1074 bp

>AT212216 NZ_CP106998:1800483-1800737 [Escherichia coli]
GTGAAACTAATCTGGTCTGAGGAATCATGGGACGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References