Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/-
Location 3085003..3086278 Replicon chromosome
Accession NZ_CP080512
Organism Pseudomonas protegens strain CM-YJ10_15-44

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag K1T36_RS14350 Protein ID WP_220224264.1
Coordinates 3085679..3086278 (+) Length 200 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag K1T36_RS14345 Protein ID WP_176707103.1
Coordinates 3085003..3085560 (+) Length 186 a.a.

Genomic Context

K1T36_RS14315K1T36_RS14320K1T36_RS14330K1T36_RS14345K1T36_RS14350K1T36_RS14355K1T36_RS14325K1T36_RS14335K1T36_RS14340K1T36_RS14360K1T36_RS14365K1T36_RS14370
Location: 3080256..3080906 (651 bp)
Type: Others
Protein ID: WP_220224260.1
Location: 3080994..3081614 (621 bp)
Type: Others
Protein ID: WP_220224261.1
Location: 3082658..3083845 (1188 bp)
Type: Others
Protein ID: WP_220224262.1
Location: 3085003..3085560 (558 bp)
Type: Antitoxin
Protein ID: WP_176707103.1
Location: 3085679..3086278 (600 bp)
Type: Toxin
Protein ID: WP_220224264.1
Location: 3086493..3088673 (2181 bp)
Type: Others
Protein ID: WP_220224265.1
Location: 3081660..3082247 (588 bp)
Type: Others
Protein ID: WP_019093798.1
Location: 3084024..3084470 (447 bp)
Type: Others
Protein ID: WP_246881499.1
Location: 3084472..3084813 (342 bp)
Type: Others
Protein ID: WP_220224263.1
Location: 3088735..3089403 (669 bp)
Type: Others
Protein ID: WP_258571656.1
Location: 3089381..3090001 (621 bp)
Type: Others
Protein ID: WP_047286240.1
Location: 3090068..3090496 (429 bp)
Type: Others
Protein ID: WP_220224267.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
K1T36_RS14315 (K1T36_14315)3080256..3080906+651WP_220224260.1DUF2239 family protein-
K1T36_RS14320 (K1T36_14320)3080994..3081614+621WP_220224261.1LysE family translocator-
K1T36_RS14325 (K1T36_14325)3081660..3082247-588WP_019093798.1AidA/PixA family protein-
K1T36_RS14330 (K1T36_14330)3082658..3083845+1188WP_220224262.1PrpF domain-containing protein-
K1T36_RS14335 (K1T36_14335)3084024..3084470-447WP_246881499.1hypothetical protein-
K1T36_RS14340 (K1T36_14340)3084472..3084813-342WP_220224263.1low molecular weight protein tyrosine phosphatase family protein-
K1T36_RS14345 (K1T36_14345)3085003..3085560+558WP_176707103.1helix-turn-helix transcriptional regulatorAntitoxin
K1T36_RS14350 (K1T36_14350)3085679..3086278+600WP_220224264.1HD domain-containing proteinToxin
K1T36_RS14355 (K1T36_14355)3086493..3088673+2181WP_220224265.1catalase/peroxidase HPI-
K1T36_RS14360 (K1T36_14360)3088735..3089403-669WP_258571656.1hypothetical protein-
K1T36_RS14365 (K1T36_14365)3089381..3090001-621WP_047286240.1hypothetical protein-
K1T36_RS14370 (K1T36_14370)3090068..3090496-429WP_220224267.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

5'-deoxynucleotidase YfbR/HDDC2

(8-161)

Antitoxin

Cro/C1-type helix-turn-helix domain

(12-46)


Sequences

Toxin        


Download         Length: 200 a.a.        Molecular weight: 22440.24 Da        Isoelectric Point: 5.7927

>T211974 WP_220224264.1 NZ_CP080512:3085679-3086278 [Pseudomonas protegens]
MNSELLSGRLDFLREAEKLKDVLRSAHTSSGRQESTAEHSWRLCLMALLFEDQLGDLDLLRVLKLCIVHDLGEAIHGDIP
AVAQAAHPDKSQQERADLQLLARALDAPAREHLLELWDEYEGAASAEAQTVKALDKLETLLQHTQGQNPAGFDYRFNLGY
GRRYTDASPLFQALRQQIDIDTQRRLDAQAQAAVHHRLR

Download         Length: 600 bp

>T211974 NZ_CP106890:351915-352262 [Klebsiella pneumoniae]
ATGTGGGATGTAGAAACGACGGATACGTTTGATGCCTGGTTCGAATTACAAAGTAGAGCTTTAAAAGAGGATATGTTGGC
CACGATGCTCATCCTGTCTGAGTTTGCTCCGCAGCTTGGGCGCCCGTATGTTGATACGGTGAAAGATTCAACGTTTCAGA
ATATGAAAGAACTGCGGGTTCAGCATCATGGGCTCCCCATCCGCGCCTGTTTTGCTTTTGATCCTCTGCGGAAAGCTATC
GTTTTATGTGTGGGCAATAAGGATGGCATGAATGAGAAACGTTTTTACAAAGAGATGATTACTCTGGCTGACAGAGAATT
CAGCCAACACCTGACTAAGGAGCGATAA

Antitoxin


Download         Length: 186 a.a.        Molecular weight: 20342.24 Da        Isoelectric Point: 7.0952

>AT211974 WP_176707103.1 NZ_CP080512:3085003-3085560 [Pseudomonas protegens]
MPAAPFTSPHLGLALRRWRLLHRVKQQHAAELFGVAQSSISRWENGQQAMEPAERARLEQLLAANLSAAADQALARLVND
SPRAVHLVCDLTHRLLACSATRAGQFGVPLSELLGHSLWGFCTEEIVRKEAALDDLGWREVLAPPSLEFFSGHNDSAIVP
IAPSQCRWTRLNLSDGNAVRLVETL

Download         Length: 558 bp

>AT211974 NZ_CP106890:352262-352561 [Klebsiella pneumoniae]
ATGGCCACGCTAAAAGAACTCATGGCGAAACAGAGTCCTGATAGCCAGCAGCGTATTGCAGCGAAAGCGGCAGAGATACG
CCAGTCTGTCGCTTTAAACTTGCTTCGAGAAGAGTTGCAAATGTCGCAAACAGAGATGGCTGCGGCTATGGGGGTAAAGC
AGCCAACGATCGCTAAAATGGAACAGGCTGATAACGACCCTCGGCTTTCGACCCTAAAACGCTACATTGCGGCATTGGGG
GGAGAACTCAGTATAAATGTCACATTGCCGACTGGAAAAAAAGTCTCGTTTAATTTGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References