Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 178204..178720 | Replicon | chromosome |
| Accession | NZ_CP080512 | ||
| Organism | Pseudomonas protegens strain CM-YJ10_15-44 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | F9XXF1 |
| Locus tag | K1T36_RS00795 | Protein ID | WP_011058535.1 |
| Coordinates | 178439..178720 (+) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | Q4KKD3 |
| Locus tag | K1T36_RS00790 | Protein ID | WP_011058534.1 |
| Coordinates | 178204..178449 (+) | Length | 82 a.a. |
Genomic Context
Location: 175698..177308 (1611 bp)
Type: Others
Protein ID: WP_220223516.1
Type: Others
Protein ID: WP_220223516.1
Location: 177418..177879 (462 bp)
Type: Others
Protein ID: WP_011058532.1
Type: Others
Protein ID: WP_011058532.1
Location: 177894..178139 (246 bp)
Type: Others
Protein ID: WP_011058533.1
Type: Others
Protein ID: WP_011058533.1
Location: 178204..178449 (246 bp)
Type: Antitoxin
Protein ID: WP_011058534.1
Type: Antitoxin
Protein ID: WP_011058534.1
Location: 178439..178720 (282 bp)
Type: Toxin
Protein ID: WP_011058535.1
Type: Toxin
Protein ID: WP_011058535.1
Location: 178863..179291 (429 bp)
Type: Others
Protein ID: WP_011058536.1
Type: Others
Protein ID: WP_011058536.1
Location: 179288..181375 (2088 bp)
Type: Others
Protein ID: WP_041751900.1
Type: Others
Protein ID: WP_041751900.1
Location: 181372..181581 (210 bp)
Type: Others
Protein ID: WP_011058538.1
Type: Others
Protein ID: WP_011058538.1
Location: 181578..182468 (891 bp)
Type: Others
Protein ID: WP_220223517.1
Type: Others
Protein ID: WP_220223517.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K1T36_RS00775 (K1T36_00775) | 175698..177308 | + | 1611 | WP_220223516.1 | glycosyltransferase family 39 protein | - |
| K1T36_RS00780 (K1T36_00780) | 177418..177879 | + | 462 | WP_011058532.1 | YbaK/EbsC family protein | - |
| K1T36_RS00785 (K1T36_00785) | 177894..178139 | + | 246 | WP_011058533.1 | DUF2789 domain-containing protein | - |
| K1T36_RS00790 (K1T36_00790) | 178204..178449 | + | 246 | WP_011058534.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| K1T36_RS00795 (K1T36_00795) | 178439..178720 | + | 282 | WP_011058535.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| K1T36_RS00800 (K1T36_00800) | 178863..179291 | + | 429 | WP_011058536.1 | winged helix DNA-binding protein | - |
| K1T36_RS00805 (K1T36_00805) | 179288..181375 | + | 2088 | WP_041751900.1 | FUSC family protein | - |
| K1T36_RS00810 (K1T36_00810) | 181372..181581 | + | 210 | WP_011058538.1 | DUF1656 domain-containing protein | - |
| K1T36_RS00815 (K1T36_00815) | 181578..182468 | + | 891 | WP_220223517.1 | HlyD family secretion protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10839.72 Da Isoelectric Point: 10.2298
>T211970 WP_011058535.1 NZ_CP080512:178439-178720 [Pseudomonas protegens]
MTYSLEFLPSAHKEWNKLGHTLREQFKKKLAERLEVPRIPADALHGLPDCYKIKLKASGYRLVYQVIEERVVVCVVAVGK
RERGTVYEQARKR
MTYSLEFLPSAHKEWNKLGHTLREQFKKKLAERLEVPRIPADALHGLPDCYKIKLKASGYRLVYQVIEERVVVCVVAVGK
RERGTVYEQARKR
Download Length: 282 bp
>T211970 NZ_CP106887:36452-36922 [Klebsiella pneumoniae]
GTGATCCTCTACAGGCTGACGAAAACAAAGTATCTTTCTACGGCCTGGACCGGATATGGTGCGAAAGAGGCTGGTGGGCG
CTGGAATAGCGTGGGGGTGTCAATGGTATATGTCTCCGAAACGGCATCACTAACGATGCTGGAGACGCTGGTACACCTGC
ATGCGGCACAGATAATGGACTCTTTCACTCTACTGAGTATCGATGTGCCTGATGAACTGATCCAAAGCGCAAACATGGAT
GAATTACCGGGCAACTGGGCTGATGAGGATGCGCCTCAGGAACTGGCTGATTACGGAGATGCCTGGTCATTTACCAGGAG
CTCGGTTGCACTGCGTGTTCCCTCAGCCTTATCGCCGGTAGAGTTCAATTATCTGTTAAATCCTGAGCACCCTGAGTTTT
ACGGGATCGTGCTGAAGGCTCAACAGATACCGTTCCGGTTTGATAGTCGTCTTAAACCTGACAGGAAGTGA
GTGATCCTCTACAGGCTGACGAAAACAAAGTATCTTTCTACGGCCTGGACCGGATATGGTGCGAAAGAGGCTGGTGGGCG
CTGGAATAGCGTGGGGGTGTCAATGGTATATGTCTCCGAAACGGCATCACTAACGATGCTGGAGACGCTGGTACACCTGC
ATGCGGCACAGATAATGGACTCTTTCACTCTACTGAGTATCGATGTGCCTGATGAACTGATCCAAAGCGCAAACATGGAT
GAATTACCGGGCAACTGGGCTGATGAGGATGCGCCTCAGGAACTGGCTGATTACGGAGATGCCTGGTCATTTACCAGGAG
CTCGGTTGCACTGCGTGTTCCCTCAGCCTTATCGCCGGTAGAGTTCAATTATCTGTTAAATCCTGAGCACCCTGAGTTTT
ACGGGATCGTGCTGAAGGCTCAACAGATACCGTTCCGGTTTGATAGTCGTCTTAAACCTGACAGGAAGTGA
Antitoxin
Download Length: 82 a.a. Molecular weight: 8799.10 Da Isoelectric Point: 4.3988
>AT211970 WP_011058534.1 NZ_CP080512:178204-178449 [Pseudomonas protegens]
MQSILADKAVSVSELKKNPSAVLSGAQGGPVAVLNHNRVMGYMVPAEVFEALMERLDDLELAEIIRERSHETPVPVSLDD
L
MQSILADKAVSVSELKKNPSAVLSGAQGGPVAVLNHNRVMGYMVPAEVFEALMERLDDLELAEIIRERSHETPVPVSLDD
L
Download Length: 246 bp
>AT211970 NZ_CP106887:36012-36455 [Klebsiella pneumoniae]
ATGAAAACTTTTAGTTTGTCCTCAACTCCAGCCAGACCACAGCGCCTCTGGCAGGTTGCCGGGTTAAATAATGCTGATGG
TGTAGCGCTCCTGGGCCAAATCAATGAAGGCCTGGACGGGAAGGTGGCCAACCGGATCACTGACTGGGCCAGAATAACCC
AGAATGACCTGAGAAAAATGTCCGGTATCCCGTCGACCACTTTTAGCCGCAGTGTGAAGGCACGTTTTAACCCGGAACAA
AGTGAACGTCTGGTACGGATTATCCGCGTCATTGATCGGGCGGTAGATTTGTTTGAAGGCGACAAGGAAGCCGCACAGAA
GTGGTTGAACGAACCTAACCGGGCATTGAGCTGGAAAGTGCCAGCAGACCTGATGGCATCCGAGACGGGAGCGTATGAGG
TCATTAAGCTGATTACGCGTCTGGAGCATGGGGTGTACTCGTGA
ATGAAAACTTTTAGTTTGTCCTCAACTCCAGCCAGACCACAGCGCCTCTGGCAGGTTGCCGGGTTAAATAATGCTGATGG
TGTAGCGCTCCTGGGCCAAATCAATGAAGGCCTGGACGGGAAGGTGGCCAACCGGATCACTGACTGGGCCAGAATAACCC
AGAATGACCTGAGAAAAATGTCCGGTATCCCGTCGACCACTTTTAGCCGCAGTGTGAAGGCACGTTTTAACCCGGAACAA
AGTGAACGTCTGGTACGGATTATCCGCGTCATTGATCGGGCGGTAGATTTGTTTGAAGGCGACAAGGAAGCCGCACAGAA
GTGGTTGAACGAACCTAACCGGGCATTGAGCTGGAAAGTGCCAGCAGACCTGATGGCATCCGAGACGGGAGCGTATGAGG
TCATTAAGCTGATTACGCGTCTGGAGCATGGGGTGTACTCGTGA