Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2692716..2692915 | Replicon | chromosome |
| Accession | NZ_CP080470 | ||
| Organism | Enterobacter hormaechei strain ECC59 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2692719..2692822 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2692716..2692915 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K0823_RS12910 (K0823_12910) | 2688974..2690422 | + | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K0823_RS12915 (K0823_12915) | 2690529..2690768 | + | 240 | WP_003859885.1 | YebV family protein | - |
| K0823_RS12920 (K0823_12920) | 2690803..2691447 | - | 645 | WP_220153148.1 | protein-serine/threonine phosphatase | - |
| K0823_RS12925 (K0823_12925) | 2691615..2692595 | + | 981 | WP_220153149.1 | VirK/YbjX family protein | - |
| K0823_RS12930 (K0823_12930) | 2692641..2692838 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2692716..2692915 | + | 200 | - | - | Antitoxin |
| - | 2692719..2692822 | - | 104 | - | - | Toxin |
| K0823_RS12935 (K0823_12935) | 2692964..2693302 | - | 339 | WP_003859787.1 | YebY family protein | - |
| K0823_RS12940 (K0823_12940) | 2693319..2694188 | - | 870 | WP_045329843.1 | copper homeostasis membrane protein CopD | - |
| K0823_RS12945 (K0823_12945) | 2694190..2694561 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| K0823_RS12950 (K0823_12950) | 2694699..2694929 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| K0823_RS12955 (K0823_12955) | 2695041..2695691 | + | 651 | WP_220153150.1 | carbon-nitrogen hydrolase family protein | - |
| K0823_RS12960 (K0823_12960) | 2695716..2696378 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T211929 NZ_CP080470:c2692822-2692719 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT211929 NZ_CP080470:2692716-2692915 [Enterobacter hormaechei]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
