Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-Phd |
| Location | 213452..213999 | Replicon | chromosome |
| Accession | NZ_CP080463 | ||
| Organism | Vibrio cholerae strain ICDC-VC702 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | K1T74_RS15645 | Protein ID | WP_131476981.1 |
| Coordinates | 213697..213999 (+) | Length | 101 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | Q9KM93 |
| Locus tag | K1T74_RS15640 | Protein ID | WP_000861987.1 |
| Coordinates | 213452..213709 (+) | Length | 86 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K1T74_RS15600 | 208941..209486 | + | 546 | WP_000494513.1 | GNAT family protein | - |
| K1T74_RS15610 | 209626..209922 | + | 297 | WP_000617997.1 | Dabb family protein | - |
| K1T74_RS19895 | 209997..210062 | + | 66 | Protein_243 | acetyltransferase | - |
| K1T74_RS15615 | 210094..210633 | + | 540 | WP_001898634.1 | histidine phosphatase family protein | - |
| K1T74_RS15620 | 210774..211322 | + | 549 | WP_220106434.1 | hypothetical protein | - |
| K1T74_RS15625 | 211607..212032 | + | 426 | WP_001913434.1 | hypothetical protein | - |
| K1T74_RS15630 | 212230..212727 | + | 498 | WP_000259905.1 | GNAT family N-acetyltransferase | - |
| K1T74_RS19900 | 212783..212851 | + | 69 | Protein_248 | acetyltransferase | - |
| K1T74_RS15635 | 213022..213201 | + | 180 | WP_025998961.1 | DUF645 family protein | - |
| K1T74_RS15640 | 213452..213709 | + | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| K1T74_RS15645 | 213697..213999 | + | 303 | WP_131476981.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| K1T74_RS15650 | 214340..214492 | + | 153 | WP_001893908.1 | DUF645 family protein | - |
| K1T74_RS15655 | 214700..215047 | + | 348 | WP_142542447.1 | hypothetical protein | - |
| K1T74_RS15660 | 215166..215471 | + | 306 | WP_258534313.1 | hypothetical protein | - |
| K1T74_RS15665 | 215589..216249 | + | 661 | Protein_255 | Vat family streptogramin A O-acetyltransferase | - |
| K1T74_RS19905 | 216386..216784 | + | 399 | Protein_256 | GNAT family N-acetyltransferase | - |
| K1T74_RS19910 | 216908..217078 | + | 171 | WP_001080654.1 | hypothetical protein | - |
| K1T74_RS15675 | 217078..217479 | + | 402 | WP_220106435.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| K1T74_RS19915 | 217482..217592 | + | 111 | WP_082798255.1 | DUF3265 domain-containing protein | - |
| K1T74_RS15680 | 217620..218087 | + | 468 | WP_025992851.1 | GNAT family N-acetyltransferase | - |
| K1T74_RS15685 | 218288..218539 | + | 252 | WP_088124792.1 | TIGR03643 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integron | - | - | 146834..233648 | 86814 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11739.64 Da Isoelectric Point: 4.8838
>T211899 WP_131476981.1 NZ_CP080463:213697-213999 [Vibrio cholerae]
MVEIIWTEPALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVNLCRVFYKYDDANV
RILFVMRAERDLRRLMLTKQ
MVEIIWTEPALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVNLCRVFYKYDDANV
RILFVMRAERDLRRLMLTKQ
Download Length: 303 bp
>T211899 NZ_CP106834:1916249-1916710 [Staphylococcus epidermidis]
GTGGGGAAATATGAGGATATGTTAATTGAACATGACTATATTGAAGTCATTGAATGTGATAACTTACCTAAAAGGTTATC
TGGCTTGTGGCTTGGAGATATGATTTTAATTAATCGTAACTTACCTATTACTTCCAAACTTGAAACACTTGCAGAGGAAC
TCGCTCATAACGAACTTACATATGGAAATATAGTTGATCAAAGTAGTTTTAATCATAGAAAATTTGAAGGTTATGCACGT
AGGTTAGCCTATGAAAAGTTAGTCCCTCTTAAAGATATTGTAAAAGCATTTTTGCAAGGCATTCATGACTTGTATGAACT
TGCAAATTTTTTTGAGGTTACAGAAGGTTTTGTCCAACAAAGTATTGCACATTATAAACAAAAATATGGCTTAACAACTC
GATGTGGTGATTATGTTATAGCATTTGAACCTTTAAGAGTTTTTGAGTACAAAGAAATATAG
GTGGGGAAATATGAGGATATGTTAATTGAACATGACTATATTGAAGTCATTGAATGTGATAACTTACCTAAAAGGTTATC
TGGCTTGTGGCTTGGAGATATGATTTTAATTAATCGTAACTTACCTATTACTTCCAAACTTGAAACACTTGCAGAGGAAC
TCGCTCATAACGAACTTACATATGGAAATATAGTTGATCAAAGTAGTTTTAATCATAGAAAATTTGAAGGTTATGCACGT
AGGTTAGCCTATGAAAAGTTAGTCCCTCTTAAAGATATTGTAAAAGCATTTTTGCAAGGCATTCATGACTTGTATGAACT
TGCAAATTTTTTTGAGGTTACAGAAGGTTTTGTCCAACAAAGTATTGCACATTATAAACAAAAATATGGCTTAACAACTC
GATGTGGTGATTATGTTATAGCATTTGAACCTTTAAGAGTTTTTGAGTACAAAGAAATATAG
Antitoxin
Download Length: 86 a.a. Molecular weight: 9647.15 Da Isoelectric Point: 7.3178
>AT211899 WP_000861987.1 NZ_CP080463:213452-213709 [Vibrio cholerae]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK
Download Length: 258 bp
>AT211899 NZ_CP106834:1915922-1916236 [Staphylococcus epidermidis]
ATGTGCTTTTCAAAAAGAATGAAACAATCAAGAGAAAAACAAGGTATGACTTTAGCTGAACTAGGAAGAAAAATCGGTAA
AACTGAAGCTACTGTACAACGTTATGAAAGCGGAAATATTAAAAATCTTAAAAATGATACTATTGAAAGTATAGCTACTG
CATTAAATGTTAACCCTGCTTTCTTGATGGGTTGGATAGAAGATGTTGAGGAACAACCACAACATCGTGCAGCACATCTT
GATGGTGATTTAACTGACGAAGAATGGCAAGAAATTCTTGATTACGCTGAATACATAAGAAGTAAAAGAAAATAA
ATGTGCTTTTCAAAAAGAATGAAACAATCAAGAGAAAAACAAGGTATGACTTTAGCTGAACTAGGAAGAAAAATCGGTAA
AACTGAAGCTACTGTACAACGTTATGAAAGCGGAAATATTAAAAATCTTAAAAATGATACTATTGAAAGTATAGCTACTG
CATTAAATGTTAACCCTGCTTTCTTGATGGGTTGGATAGAAGATGTTGAGGAACAACCACAACATCGTGCAGCACATCTT
GATGGTGATTTAACTGACGAAGAATGGCAAGAAATTCTTGATTACGCTGAATACATAAGAAGTAAAAGAAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|