Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2017531..2017802 | Replicon | chromosome |
| Accession | NZ_CP080370 | ||
| Organism | Escherichia coli strain PK5086 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2017661..2017764 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2017531..2017802 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K0H55_RS09680 | 2014086..2014748 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K0H55_RS09685 | 2014772..2015428 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K0H55_RS09690 | 2015530..2015760 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K0H55_RS09695 | 2015899..2016273 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| K0H55_RS09700 | 2016277..2017149 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| K0H55_RS09705 | 2017162..2017503 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2017531..2017802 | - | 272 | - | - | Antitoxin |
| - | 2017661..2017764 | + | 104 | - | - | Toxin |
| K0H55_RS09710 | 2017899..2018555 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K0H55_RS09715 | 2018556..2018747 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K0H55_RS09720 | 2018852..2019088 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K0H55_RS09725 | 2019206..2020645 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T211805 NZ_CP080370:2017661-2017764 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT211805 NZ_CP080370:c2017802-2017531 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
