Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1989310..1989453 Replicon
Accession NC_006905
Organism Salmonella enterica subsp. enterica serovar Choleraesuis str.

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1989312..1989415 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1989310..1989453 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1989310..1989453 + 144 NuclAT_1 - Antitoxin
- 1989312..1989415 - 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T21175 NC_006905:c1989415-1989312 [Salmonella enterica subsp. enterica serovar Choleraesuis str.]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT21175 NC_006905:1989310-1989453 [Salmonella enterica subsp. enterica serovar Choleraesuis str.]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References