Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2008193..2008338 | Replicon | chromosome |
| Accession | NZ_CP080309 | ||
| Organism | Klebsiella pneumoniae strain KP-426 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2008229..2008331 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2008193..2008338 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZ481_RS09830 (KZ481_09835) | 2003323..2005383 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KZ481_RS09835 (KZ481_09840) | 2005387..2006046 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KZ481_RS09840 (KZ481_09845) | 2006125..2006355 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KZ481_RS09845 (KZ481_09850) | 2006468..2006842 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KZ481_RS09850 (KZ481_09855) | 2006846..2007715 | + | 870 | Protein_1931 | copper homeostasis membrane protein CopD | - |
| KZ481_RS09855 (KZ481_09860) | 2007732..2008070 | + | 339 | WP_211589099.1 | YebY family protein | - |
| - | 2008193..2008338 | - | 146 | - | - | Antitoxin |
| - | 2008229..2008331 | + | 103 | - | - | Toxin |
| KZ481_RS09860 (KZ481_09865) | 2008706..2008849 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KZ481_RS09865 (KZ481_09870) | 2008954..2009922 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KZ481_RS09870 (KZ481_09875) | 2010079..2010732 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| KZ481_RS09875 (KZ481_09880) | 2010729..2010920 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KZ481_RS09880 (KZ481_09885) | 2011018..2011257 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KZ481_RS09885 (KZ481_09890) | 2011373..2012806 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T211678 NZ_CP080309:2008229-2008331 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT211678 NZ_CP080309:c2008338-2008193 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
