Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-RelB
Location 1832330..1832859 Replicon chromosome
Accession NZ_CP080294
Organism Cupriavidus cauae strain PHS1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag KZ686_RS23425 Protein ID WP_265633839.1
Coordinates 1832590..1832859 (+) Length 90 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag KZ686_RS23420 Protein ID WP_149316065.1
Coordinates 1832330..1832593 (+) Length 88 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(7-86)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-70)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10463.86 Da        Isoelectric Point: 8.8311

>T211612 WP_265633839.1 NZ_CP080294:1832590-1832859 [Cupriavidus cauae]
MTRHLTFMPAAWEDYIYWQGQDKKTLKRINALIQDAQRNPFEGLGKPEQLKGTLSGYRSRRIDDTNRLVYYANDDELAII
ACRLHYGDK

Download         Length: 270 bp

>T211612 NZ_CP106654:1875064-1875166 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9905.17 Da        Isoelectric Point: 6.0619

>AT211612 WP_149316065.1 NZ_CP080294:1832330-1832593 [Cupriavidus cauae]
MRTIHFSDARNNLKAVIDQAIADHDAILITRRDAPNAVIMSQEQYDSWMETMYLLSNPANAKRLMQSIDQHRSGKGVKHD
LIDPDAE

Download         Length: 264 bp

>AT211612 NZ_CP106654:c1875173-1875028 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References