Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 42027..42562 | Replicon | plasmid p135-3 |
| Accession | NZ_CP080263 | ||
| Organism | Escherichia coli strain 135 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | V0VJJ7 |
| Locus tag | KZ312_RS27605 | Protein ID | WP_000222760.1 |
| Coordinates | 42275..42562 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | V0VIP2 |
| Locus tag | KZ312_RS27600 | Protein ID | WP_001132900.1 |
| Coordinates | 42027..42278 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZ312_RS27560 (37216) | 37216..37428 | + | 213 | WP_032303448.1 | hypothetical protein | - |
| KZ312_RS27565 (37674) | 37674..38135 | + | 462 | WP_059328048.1 | thermonuclease family protein | - |
| KZ312_RS27570 (38181) | 38181..38390 | + | 210 | WP_001299729.1 | hemolysin expression modulator Hha | - |
| KZ312_RS27575 (38429) | 38429..38931 | + | 503 | Protein_46 | DUF2726 domain-containing protein | - |
| - (39107) | 39107..39168 | - | 62 | NuclAT_1 | - | - |
| - (39107) | 39107..39168 | - | 62 | NuclAT_1 | - | - |
| - (39107) | 39107..39168 | - | 62 | NuclAT_1 | - | - |
| - (39107) | 39107..39168 | - | 62 | NuclAT_1 | - | - |
| KZ312_RS27580 (39212) | 39212..39361 | + | 150 | WP_001312851.1 | Hok/Gef family protein | - |
| KZ312_RS27585 (39645) | 39645..39893 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
| KZ312_RS27590 (40139) | 40139..40213 | + | 75 | WP_032144212.1 | RepA leader peptide Tap | - |
| KZ312_RS27595 (40206) | 40206..41063 | + | 858 | WP_029400224.1 | incFII family plasmid replication initiator RepA | - |
| KZ312_RS27600 (42027) | 42027..42278 | + | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| KZ312_RS27605 (42275) | 42275..42562 | + | 288 | WP_000222760.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| KZ312_RS29225 (42666) | 42666..42986 | + | 321 | Protein_53 | serine acetyltransferase | - |
| KZ312_RS27610 (43002) | 43002..43349 | - | 348 | Protein_54 | IS1-like element IS1A family transposase | - |
| KZ312_RS27615 (43438) | 43438..44459 | + | 1022 | Protein_55 | IS21 family transposase | - |
| KZ312_RS27620 (44456) | 44456..45238 | + | 783 | WP_001442137.1 | IS21-like element IS100kyp family helper ATPase IstB | - |
| KZ312_RS27625 (45293) | 45293..45657 | - | 365 | Protein_57 | IS1 family transposase | - |
| KZ312_RS27630 (45757) | 45757..46960 | + | 1204 | Protein_58 | ISL3 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | - | papD / papC / papH | 1..125082 | 125082 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11105.15 Da Isoelectric Point: 10.5832
>T211549 WP_000222760.1 NZ_CP080263:42275-42562 [Escherichia coli]
MTYTVKFRDDALKEWLKLDKSIQQQFAKKLKKCSENPHIPSAKLRGLKDCYKIKLRASGFRLVYQVIDDMLIIAVVAVGK
RERSNVYNLASERMR
MTYTVKFRDDALKEWLKLDKSIQQQFAKKLKKCSENPHIPSAKLRGLKDCYKIKLRASGFRLVYQVIDDMLIIAVVAVGK
RERSNVYNLASERMR
Download Length: 288 bp
>T211549 NZ_CP104925:884518-884928 [Klebsiella pasteurii]
GTGGTCCTGTGGCAATCTGATTTACGCATCTCGTGGCGCGCGCAGTGGTTCTCACTGCTGATGCACGGCGTGGTGGCGGC
GCTGGTGCTGGTATTGCCCTGGCCGCTGAGCTATACCCCGCTGTGGCTGATATTGCTGTCGCTGGTAGTCTTCGACTGCG
TACGCAGCCAGCGGCGGATCCACGCCCGTCAGGGTGAAATAAAGCTGCTGATCGACTCGCGTCTGCGCTGGCAAAAGGCG
GAGTGGGATATCATCGGCACGCCGTGGGTAATCAACAGCGGCATGCTGCTGCGCCTGCGGAATACGGAAAACCAACGTAC
CCAGCATTTGTGGGTCGCGGCGGATAGCATGGACGCGGGAGAATGGCGCGACCTGCGTCGGCTAGTGTTACAGAAACCGA
CGCAAGAGTAG
GTGGTCCTGTGGCAATCTGATTTACGCATCTCGTGGCGCGCGCAGTGGTTCTCACTGCTGATGCACGGCGTGGTGGCGGC
GCTGGTGCTGGTATTGCCCTGGCCGCTGAGCTATACCCCGCTGTGGCTGATATTGCTGTCGCTGGTAGTCTTCGACTGCG
TACGCAGCCAGCGGCGGATCCACGCCCGTCAGGGTGAAATAAAGCTGCTGATCGACTCGCGTCTGCGCTGGCAAAAGGCG
GAGTGGGATATCATCGGCACGCCGTGGGTAATCAACAGCGGCATGCTGCTGCGCCTGCGGAATACGGAAAACCAACGTAC
CCAGCATTTGTGGGTCGCGGCGGATAGCATGGACGCGGGAGAATGGCGCGACCTGCGTCGGCTAGTGTTACAGAAACCGA
CGCAAGAGTAG
Antitoxin
Download Length: 84 a.a. Molecular weight: 9211.41 Da Isoelectric Point: 4.0780
>AT211549 WP_001132900.1 NZ_CP080263:42027-42278 [Escherichia coli]
MPNIILSDTSASVSELKKNPMATVSAGDGYPVAILNRNQPAFYCVPAELYERMLDALDDQELVKLVTERSNQPLHDVDLD
SYL
MPNIILSDTSASVSELKKNPMATVSAGDGYPVAILNRNQPAFYCVPAELYERMLDALDDQELVKLVTERSNQPLHDVDLD
SYL
Download Length: 252 bp
>AT211549 NZ_CP104925:884271-884537 [Klebsiella pasteurii]
ATGGACATTAACAATAAAGCCCGCATCCACTGGGCATGTCGTCGAGGTATGCGTGAACTCGATATCTCCATCATGCCGTT
TTTCGAGCATGAGTACGACACGCTAAGCGATGGCGATAAGGCGTTATTCATCCGCCTGCTGGAAAATGACGATCCGGATC
TGTTCAACTGGTTGATGAATCATGGCGAGCCGGCTGATGCTGAACTGCAGCGGATGGTAAAATTAATTCAGACTCGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA
ATGGACATTAACAATAAAGCCCGCATCCACTGGGCATGTCGTCGAGGTATGCGTGAACTCGATATCTCCATCATGCCGTT
TTTCGAGCATGAGTACGACACGCTAAGCGATGGCGATAAGGCGTTATTCATCCGCCTGCTGGAAAATGACGATCCGGATC
TGTTCAACTGGTTGATGAATCATGGCGAGCCGGCTGATGCTGAACTGCAGCGGATGGTAAAATTAATTCAGACTCGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|