Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2111783..2112054 | Replicon | chromosome |
| Accession | NZ_CP080255 | ||
| Organism | Escherichia coli strain SJC33 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2111913..2112016 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2111783..2112054 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZ313_RS10135 | 2108338..2109000 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KZ313_RS10140 | 2109024..2109680 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZ313_RS10145 | 2109782..2110012 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZ313_RS10150 | 2110151..2110525 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KZ313_RS10155 | 2110529..2111401 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| KZ313_RS10160 | 2111414..2111755 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2111783..2112054 | - | 272 | - | - | Antitoxin |
| - | 2111913..2112016 | + | 104 | - | - | Toxin |
| KZ313_RS10165 | 2112151..2112807 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| KZ313_RS10170 | 2112808..2112999 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KZ313_RS10175 | 2113104..2113340 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KZ313_RS10180 | 2113458..2114897 | - | 1440 | WP_219805963.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2104473..2127894 | 23421 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T211481 NZ_CP080255:2111913-2112016 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT211481 NZ_CP080255:c2112054-2111783 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
