Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1118150..1118421 | Replicon | chromosome |
| Accession | NZ_CP080235 | ||
| Organism | Escherichia coli O139:H1 strain W13-16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1118188..1118291 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1118150..1118421 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZW92_RS05725 | 1115307..1116746 | + | 1440 | WP_219789629.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KZW92_RS05730 | 1116864..1117100 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KZW92_RS05735 | 1117205..1117396 | + | 192 | WP_001296140.1 | YebW family protein | - |
| KZW92_RS05740 | 1117397..1118053 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 1118150..1118421 | + | 272 | - | - | Antitoxin |
| - | 1118188..1118291 | - | 104 | - | - | Toxin |
| KZW92_RS05745 | 1118449..1118790 | - | 342 | WP_000976472.1 | YebY family protein | - |
| KZW92_RS05750 | 1118803..1119675 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| KZW92_RS05755 | 1119679..1120053 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| KZW92_RS05760 | 1120192..1120422 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZW92_RS05765 | 1120524..1121180 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZW92_RS05770 | 1121204..1121866 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1109920..1125731 | 15811 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T211316 NZ_CP080235:c1118291-1118188 [Escherichia coli O139:H1]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT211316 NZ_CP080235:1118150-1118421 [Escherichia coli O139:H1]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
