Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2929674..2929945 | Replicon | chromosome |
| Accession | NZ_CP080233 | ||
| Organism | Escherichia coli O139:H1 strain P15-25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2929712..2929815 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2929674..2929945 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZW90_RS14365 | 2926831..2928270 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KZW90_RS14370 | 2928388..2928624 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KZW90_RS14375 | 2928729..2928920 | + | 192 | WP_001296140.1 | YebW family protein | - |
| KZW90_RS14380 | 2928921..2929577 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 2929674..2929945 | + | 272 | - | - | Antitoxin |
| - | 2929712..2929815 | - | 104 | - | - | Toxin |
| KZW90_RS14385 | 2929973..2930314 | - | 342 | WP_000976472.1 | YebY family protein | - |
| KZW90_RS14390 | 2930327..2931199 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| KZW90_RS14395 | 2931203..2931577 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| KZW90_RS14400 | 2931716..2931946 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZW90_RS14405 | 2932048..2932704 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZW90_RS14410 | 2932728..2933390 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2913834..2953728 | 39894 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T211296 NZ_CP080233:c2929815-2929712 [Escherichia coli O139:H1]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT211296 NZ_CP080233:2929674-2929945 [Escherichia coli O139:H1]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
