Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2445148..2445419 | Replicon | chromosome |
| Accession | NZ_CP080172 | ||
| Organism | Escherichia coli strain PK8566 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2445186..2445289 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2445148..2445419 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZY09_RS12035 | 2442305..2443744 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KZY09_RS12040 | 2443862..2444098 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KZY09_RS12045 | 2444203..2444394 | + | 192 | WP_001296140.1 | YebW family protein | - |
| KZY09_RS12050 | 2444395..2445051 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2445148..2445419 | + | 272 | - | - | Antitoxin |
| - | 2445186..2445289 | - | 104 | - | - | Toxin |
| KZY09_RS12055 | 2445447..2445788 | - | 342 | WP_000976472.1 | YebY family protein | - |
| KZY09_RS12060 | 2445801..2446673 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| KZY09_RS12065 | 2446677..2447051 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KZY09_RS12070 | 2447190..2447420 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZY09_RS12075 | 2447522..2448178 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZY09_RS12080 | 2448202..2448864 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T211191 NZ_CP080172:c2445289-2445186 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT211191 NZ_CP080172:2445148-2445419 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
