Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1170521..1170792 | Replicon | chromosome |
| Accession | NZ_CP080146 | ||
| Organism | Escherichia coli strain PK8276 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1170651..1170754 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1170521..1170792 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZY06_RS05440 | 1167077..1167739 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KZY06_RS05445 | 1167763..1168419 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZY06_RS05450 | 1168521..1168751 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZY06_RS05455 | 1168890..1169264 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KZY06_RS05460 | 1169268..1170140 | + | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| KZY06_RS05465 | 1170153..1170494 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1170521..1170792 | - | 272 | - | - | Antitoxin |
| - | 1170651..1170754 | + | 104 | - | - | Toxin |
| KZY06_RS05470 | 1170889..1171545 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KZY06_RS05475 | 1171546..1171737 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KZY06_RS05480 | 1171842..1172078 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KZY06_RS05485 | 1172196..1173635 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T211061 NZ_CP080146:1170651-1170754 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT211061 NZ_CP080146:c1170792-1170521 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
