Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | TsxAB/MqsA(antitoxin) |
| Location | 7053..7546 | Replicon | plasmid pPK8568-MCR1 |
| Accession | NZ_CP080130 | ||
| Organism | Escherichia coli strain PK8568 | ||
Toxin (Protein)
| Gene name | TsxA | Uniprot ID | U9Y9W8 |
| Locus tag | KZY03_RS24640 | Protein ID | WP_001230709.1 |
| Coordinates | 7053..7307 (+) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | TsxB | Uniprot ID | U9Y4R8 |
| Locus tag | KZY03_RS24645 | Protein ID | WP_000151456.1 |
| Coordinates | 7304..7546 (+) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZY03_RS25220 | 2570..2722 | + | 153 | Protein_2 | DUF5431 family protein | - |
| KZY03_RS24605 (KZY03_24605) | 2667..2789 | + | 123 | WP_223685802.1 | Hok/Gef family protein | - |
| KZY03_RS24610 (KZY03_24610) | 2939..3535 | + | 597 | WP_000125165.1 | ProQ/FINO family protein | - |
| KZY03_RS24615 (KZY03_24615) | 3553..3837 | - | 285 | WP_001162371.1 | hypothetical protein | - |
| KZY03_RS24620 (KZY03_24620) | 3911..4576 | - | 666 | WP_000532149.1 | division plane positioning ATPase MipZ | - |
| KZY03_RS24625 (KZY03_24625) | 5165..5494 | + | 330 | WP_001542022.1 | hypothetical protein | - |
| KZY03_RS24630 (KZY03_24630) | 5895..6410 | + | 516 | WP_001025393.1 | J domain-containing protein | - |
| KZY03_RS24635 (KZY03_24635) | 6514..7056 | + | 543 | WP_001083904.1 | hypothetical protein | - |
| KZY03_RS24640 (KZY03_24640) | 7053..7307 | + | 255 | WP_001230709.1 | hypothetical protein | Toxin |
| KZY03_RS24645 (KZY03_24645) | 7304..7546 | + | 243 | WP_000151456.1 | hypothetical protein | Antitoxin |
| KZY03_RS24650 (KZY03_24650) | 8117..8410 | + | 294 | WP_000673428.1 | hypothetical protein | - |
| KZY03_RS24655 (KZY03_24655) | 8899..9147 | + | 249 | WP_000513532.1 | type II toxin-antitoxin system HicA family toxin | - |
| KZY03_RS24660 (KZY03_24660) | 9144..9491 | + | 348 | WP_000681609.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| KZY03_RS25225 | 9579..10022 | - | 444 | WP_225930715.1 | hypothetical protein | - |
| KZY03_RS24670 (KZY03_24670) | 10263..10562 | + | 300 | WP_034169410.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| KZY03_RS24675 (KZY03_24675) | 10822..11148 | - | 327 | WP_000206697.1 | hypothetical protein | - |
| KZY03_RS24680 (KZY03_24680) | 11150..11473 | - | 324 | WP_223666488.1 | hypothetical protein | - |
| KZY03_RS25230 | 11450..11590 | - | 141 | Protein_19 | hypothetical protein | - |
| KZY03_RS24685 (KZY03_24685) | 11610..12317 | - | 708 | WP_000108794.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Mobilizable plasmid | mcr-1.1 | - | 1..60659 | 60659 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 9942.47 Da Isoelectric Point: 10.1206
>T210988 WP_001230709.1 NZ_CP080130:7053-7307 [Escherichia coli]
MRKNKGRLTYYLEVIDKKYHFVKKISSYSKEFTDGKTKRTKRTLSELVFNESEVEAIDFTKNGLRPVDKNILLTMVKEYK
ESDA
MRKNKGRLTYYLEVIDKKYHFVKKISSYSKEFTDGKTKRTKRTLSELVFNESEVEAIDFTKNGLRPVDKNILLTMVKEYK
ESDA
Download Length: 255 bp
>T210988 NZ_CP104650:6904-7179 [Escherichia coli]
ATGGAACTGAAGTGGAGCAGTAAAGCGCTTTCTGATTTGGCGCGGTTATATGATTTTCTGGTGCTAGCCAGTAAACCTGC
TGCCGCCAGAACGGTACAGTCCCTGACACAGGCACCGGTCATTCTGTTAACTCATCCACGTATGGGGGAACAGTTATTTC
AGTTTGAACCCAGGGAGGTCAGACGGATTTTTGCTGGCGAGTACGAAATCCGTTACGAACTTAATGGCCAGACTATTTAT
GTATTGCGCCTGTGGCACACACGAGAAAACAGGTAG
ATGGAACTGAAGTGGAGCAGTAAAGCGCTTTCTGATTTGGCGCGGTTATATGATTTTCTGGTGCTAGCCAGTAAACCTGC
TGCCGCCAGAACGGTACAGTCCCTGACACAGGCACCGGTCATTCTGTTAACTCATCCACGTATGGGGGAACAGTTATTTC
AGTTTGAACCCAGGGAGGTCAGACGGATTTTTGCTGGCGAGTACGAAATCCGTTACGAACTTAATGGCCAGACTATTTAT
GTATTGCGCCTGTGGCACACACGAGAAAACAGGTAG
Antitoxin
Download Length: 81 a.a. Molecular weight: 9136.45 Da Isoelectric Point: 7.2775
>AT210988 WP_000151456.1 NZ_CP080130:7304-7546 [Escherichia coli]
MTIENTPENIKKLRKKIGLTQTECGEIFGVGLSTWQKKEAKTHNQLNLSKGEFEYLLLLAGEHPEYVLHKKAESRSPEEP
MTIENTPENIKKLRKKIGLTQTECGEIFGVGLSTWQKKEAKTHNQLNLSKGEFEYLLLLAGEHPEYVLHKKAESRSPEEP
Download Length: 243 bp
>AT210988 NZ_CP104650:6620-6904 [Escherichia coli]
ATGCAAATGAAAAACAATACCGCACAAGCAACAAAAGTCATTACCGCGCATGTGCCATTACCTATGGCTGATAAAGTCGA
CCAGATGGCCGCCAGACTGGAACGCTCCCGGGGTTGGGTTATCAAACAGGCGCTTTCTGCATGGCTTGCCCAGGAGGAGG
AGCGTAATCGCCTGACGCTGGAAGCCCTGGACGATGTGACATCCGGACAGGTTATTGACCATCAGGCTGTACAGGCCTGG
GCGGACAGCCTCAGTACTGACAATCCGTTACCGGTGCCACGCTGA
ATGCAAATGAAAAACAATACCGCACAAGCAACAAAAGTCATTACCGCGCATGTGCCATTACCTATGGCTGATAAAGTCGA
CCAGATGGCCGCCAGACTGGAACGCTCCCGGGGTTGGGTTATCAAACAGGCGCTTTCTGCATGGCTTGCCCAGGAGGAGG
AGCGTAATCGCCTGACGCTGGAAGCCCTGGACGATGTGACATCCGGACAGGTTATTGACCATCAGGCTGTACAGGCCTGG
GCGGACAGCCTCAGTACTGACAATCCGTTACCGGTGCCACGCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A3G9H8F0 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A3G9GNF5 |