Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1899580..1899851 | Replicon | chromosome |
| Accession | NZ_CP080121 | ||
| Organism | Escherichia coli strain PK8217 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1899710..1899813 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1899580..1899851 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZO72_RS09105 | 1896135..1896797 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KZO72_RS09110 | 1896821..1897477 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZO72_RS09115 | 1897579..1897809 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZO72_RS09120 | 1897948..1898322 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| KZO72_RS09125 | 1898326..1899198 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| KZO72_RS09130 | 1899211..1899552 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1899580..1899851 | - | 272 | - | - | Antitoxin |
| - | 1899710..1899813 | + | 104 | - | - | Toxin |
| KZO72_RS09135 | 1899948..1900604 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| KZO72_RS09140 | 1900605..1900796 | - | 192 | WP_001313035.1 | YebW family protein | - |
| KZO72_RS09145 | 1900901..1901137 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KZO72_RS09150 | 1901255..1902694 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210935 NZ_CP080121:1899710-1899813 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT210935 NZ_CP080121:c1899851-1899580 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
