210892

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 4264136..4264404 Replicon chromosome
Accession NZ_CP080119
Organism Escherichia coli strain M45

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 4264174..4264276 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 4264136..4264404 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KZX76_RS20880 4261294..4262733 + 1440 WP_001296139.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
KZX76_RS20885 4262850..4263086 + 237 WP_001295499.1 YebV family protein -
KZX76_RS20890 4263191..4263382 + 192 WP_001296140.1 YebW family protein -
KZX76_RS20895 4263383..4264039 - 657 WP_000812745.1 protein-serine/threonine phosphatase -
- 4264136..4264404 + 269 - - Antitoxin
- 4264174..4264276 - 103 - - Toxin
KZX76_RS20900 4264434..4264775 - 342 WP_000976472.1 YebY family protein -
KZX76_RS20905 4264788..4265660 - 873 WP_000879317.1 copper homeostasis membrane protein CopD -
KZX76_RS20910 4265664..4266038 - 375 WP_000168747.1 CopC domain-containing protein YobA -
KZX76_RS20915 4266177..4266407 + 231 WP_000916763.1 DNA polymerase III subunit theta -
KZX76_RS20920 4266509..4267165 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein YobB -
KZX76_RS20925 4267189..4267851 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T210892 NZ_CP080119:c4264276-4264174 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT210892 NZ_CP080119:4264136-4264404 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References