Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4605029..4605297 | Replicon | chromosome |
| Accession | NZ_CP080116 | ||
| Organism | Escherichia coli strain Dog168 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4605157..4605259 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4605029..4605297 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZX73_RS22350 | 4601582..4602244 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KZX73_RS22355 | 4602268..4602924 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZX73_RS22360 | 4603026..4603256 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZX73_RS22365 | 4603395..4603769 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KZX73_RS22370 | 4603773..4604645 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| KZX73_RS22375 | 4604658..4604999 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4605029..4605297 | - | 269 | - | - | Antitoxin |
| - | 4605157..4605259 | + | 103 | - | - | Toxin |
| KZX73_RS22380 | 4605394..4606050 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| KZX73_RS22385 | 4606051..4606242 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KZX73_RS22390 | 4606347..4606583 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KZX73_RS22395 | 4606700..4608139 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T210811 NZ_CP080116:4605157-4605259 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT210811 NZ_CP080116:c4605297-4605029 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
