Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2928372..2928516 | Replicon | chromosome |
| Accession | NZ_CP080107 | ||
| Organism | Enterobacter asburiae strain WW-19C | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2928378..2928481 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2928372..2928516 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZX48_RS14190 (KZX48_14180) | 2923529..2924977 | + | 1449 | WP_205742266.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KZX48_RS14195 (KZX48_14185) | 2925084..2925323 | + | 240 | WP_008500472.1 | YebV family protein | - |
| KZX48_RS14200 (KZX48_14190) | 2925358..2926002 | - | 645 | WP_094935589.1 | protein-serine/threonine phosphatase | - |
| KZX48_RS14205 (KZX48_14195) | 2926169..2927110 | + | 942 | WP_094935590.1 | VirK/YbjX family protein | - |
| KZX48_RS14210 (KZX48_14200) | 2927284..2928180 | + | 897 | WP_094935591.1 | benzoate transporter | - |
| - | 2928372..2928516 | + | 145 | - | - | Antitoxin |
| - | 2928378..2928481 | - | 104 | - | - | Toxin |
| KZX48_RS14215 (KZX48_14205) | 2928620..2928958 | - | 339 | WP_033145840.1 | YebY family protein | - |
| KZX48_RS14220 (KZX48_14210) | 2928975..2929844 | - | 870 | WP_094935592.1 | copper homeostasis membrane protein CopD | - |
| KZX48_RS14225 (KZX48_14215) | 2929846..2930217 | - | 372 | WP_094935593.1 | CopC domain-containing protein YobA | - |
| KZX48_RS14230 (KZX48_14220) | 2930354..2930584 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| KZX48_RS14235 (KZX48_14225) | 2930695..2931345 | + | 651 | WP_033145843.1 | carbon-nitrogen hydrolase family protein | - |
| KZX48_RS14240 (KZX48_14230) | 2931370..2932032 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210780 NZ_CP080107:c2928481-2928378 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT210780 NZ_CP080107:2928372-2928516 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
