Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1993682..1993829 | Replicon | chromosome |
| Accession | NZ_CP080099 | ||
| Organism | Klebsiella quasipneumoniae strain WW-14A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1993723..1993825 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1993682..1993829 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZX49_RS09790 | 1988817..1990877 | + | 2061 | WP_032453374.1 | oligopeptidase B | - |
| KZX49_RS09795 | 1990881..1991540 | - | 660 | WP_032453373.1 | exodeoxyribonuclease X | - |
| KZX49_RS09800 | 1991619..1991849 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KZX49_RS09805 | 1991962..1992336 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| KZX49_RS09810 | 1992340..1993209 | + | 870 | WP_048297809.1 | copper homeostasis membrane protein CopD | - |
| KZX49_RS09815 | 1993226..1993564 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1993682..1993829 | - | 148 | - | - | Antitoxin |
| - | 1993723..1993825 | + | 103 | - | - | Toxin |
| KZX49_RS09820 | 1994204..1994347 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| KZX49_RS09825 | 1994451..1995419 | - | 969 | WP_168381031.1 | VirK/YbjX family protein | - |
| KZX49_RS09830 | 1995576..1996229 | + | 654 | WP_023290232.1 | protein-serine/threonine phosphatase | - |
| KZX49_RS09835 | 1996226..1996417 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KZX49_RS09840 | 1996515..1996754 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KZX49_RS09845 | 1996870..1998300 | - | 1431 | WP_044523969.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T210762 NZ_CP080099:1993723-1993825 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT210762 NZ_CP080099:c1993829-1993682 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
