Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 939923..940194 | Replicon | chromosome |
| Accession | NZ_CP080085 | ||
| Organism | Escherichia coli strain 19SZHZ869Rt | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 939961..940064 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 939923..940194 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZO18_RS04590 | 937080..938519 | + | 1440 | WP_001400472.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KZO18_RS04595 | 938637..938873 | + | 237 | WP_001338166.1 | YebV family protein | - |
| KZO18_RS04600 | 938978..939169 | + | 192 | WP_001338167.1 | YebW family protein | - |
| KZO18_RS04605 | 939170..939826 | - | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| - | 939923..940194 | + | 272 | - | - | Antitoxin |
| - | 939961..940064 | - | 104 | - | - | Toxin |
| KZO18_RS04610 | 940222..940563 | - | 342 | WP_000976472.1 | YebY family protein | - |
| KZO18_RS04615 | 940576..941448 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| KZO18_RS04620 | 941452..941826 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| KZO18_RS04625 | 941965..942195 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZO18_RS04630 | 942297..942953 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZO18_RS04635 | 942976..943638 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210694 NZ_CP080085:c940064-939961 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT210694 NZ_CP080085:939923-940194 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
