Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1980147..1980418 | Replicon | chromosome |
| Accession | NZ_CP080066 | ||
| Organism | Escherichia coli strain 19SZHZ803Rt | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1980277..1980380 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1980147..1980418 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZO14_RS09530 | 1976702..1977364 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KZO14_RS09535 | 1977388..1978044 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZO14_RS09540 | 1978146..1978376 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZO14_RS09545 | 1978515..1978889 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KZO14_RS09550 | 1978893..1979765 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KZO14_RS09555 | 1979778..1980119 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1980147..1980418 | - | 272 | - | - | Antitoxin |
| - | 1980277..1980380 | + | 104 | - | - | Toxin |
| KZO14_RS09560 | 1980515..1981171 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KZO14_RS09565 | 1981172..1981363 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KZO14_RS09570 | 1981468..1981704 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KZO14_RS09575 | 1981822..1983261 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210599 NZ_CP080066:1980277-1980380 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT210599 NZ_CP080066:c1980418-1980147 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
